RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1159911", tax_kingdom = "Metazoa" and tax_phylum = "Brachiopoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Brachiopoda · 2 ✖

tax_kingdom 1

  • Metazoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1159911 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6686307 6686307 PRJNA1159911_P_NODE_74186_length_274_cov_1.850746_g73644_i0 PRJNA1159911 74186 274 1.850746 5.07104404 Lingula anatina 7574 Brachiopoda other_Eukaryota 213 1.09e-50   NTclustered gi|918998042|ref|XM_013539397.1| 7574 g73644 i0 81.111 14.6788321167883 270 47 98 4 7 274 436 169 PREDICTED: Lingula anatina serine/threonine-protein phosphatase alpha-2 isoform (LOC106162205), transcript variant X2, mRNA blastn 4022 213 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
30344649 30344649 PRJNA1159911_P_NODE_50232_length_346_cov_1.717949_g49690_i0 PRJNA1159911 50232 346 1.717949 5.94410354 Metazoa 33208 Brachiopoda other_Eukaryota 102 1.5299999999999999e-24   NR XP_013418339.1 7574 g49690 i0 49.5 1.85549132947977 107 52 92.8 2 345 25 90 194 XP_013418339.1 apolipoprotein D-like [Lingula anatina] diamond 642 102 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;