RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA1159911", tax_kingdom = "Fungi" and tax_phylum = "Cryptomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Cryptomycota · 2 ✖

tax_kingdom 1

  • Fungi · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1159911 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7961923 7961923 PRJNA1159911_P_NODE_88467_length_250_cov_0.870056_g87925_i0 PRJNA1159911 88467 250 0.870056 2.17514 root 1 Root_unresolved Root_unresolved 100 8.049999999999999e-23   NR PJF18069.1 1246581 g87925 i0 67.5 6.828 77 25 92.4 0 249 19 192 268 PJF18069.1 Cystathionine-beta-synthase [Paramicrosporidium saccamoebae] diamond 1707 101 0.99009900990099 Eukaryota Opisthokonta Fungi Cryptomycota       Paramicrosporidium Paramicrosporidium saccamoebae
31145778 31145778 PRJNA1159911_P_NODE_95475_length_245_cov_0.895349_g94933_i0 PRJNA1159911 95475 245 0.895349 2.19360505 Rozella allomycis CSF55 988480 Fungi Fungi 74.3 2.61e-13   NR RKP16848.1 988480 g94933 i0 48.5 4.89795918367347 68 35 83.3 0 243 40 360 427 RKP16848.1 hypothetical protein ROZALSC1DRAFT_24826 [Rozella allomycis CSF55] diamond 1200 74.3 1 Eukaryota Opisthokonta Fungi Cryptomycota       Rozella Rozella allomycis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;