RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1159911", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA1159911 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14336782 14336782 PRJNA1159911_P_NODE_47272_length_360_cov_1.073171_g46730_i0 PRJNA1159911 47272 360 1.073171 3.8634156 Simkania sp. 34094 Bacteria Bacteria 155 1.11e-44   NR MCB1084310.1 34094 g46730 i0 62.2 4.88333333333333 119 45 99.2 0 3 359 8 126 MCB1084310.1 hypothetical protein [Simkania sp.] diamond 1758 155 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Simkania Simkania sp.
15611127 15611127 PRJNA1159911_P_NODE_70333_length_283_cov_1.100000_g69791_i0 PRJNA1159911 70333 283 1.1 3.113 Chlamydiales bacterium 2047757 Bacteria Bacteria 103 2.1999999999999996e-24   NR MCH9608945.1 2047757 g69791 i0 61.5 1.92932862190813 91 32 96.5 1 277 5 47 134 MCH9608945.1 Transaldolase B [Chlamydiales bacterium] diamond 546 103 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;