RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1159911", tax_clade = "Metamonada" and tax_superkingdom = "Eukaryota"

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tax_superkingdom 1

  • Eukaryota · 3 ✖

tax_phylum 1

tax_clade 1

  • Metamonada · 3 ✖

bioproject 1

  • PRJNA1159911 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31652039 31652039 PRJNA1159911_P_NODE_32177_length_468_cov_25.281013_g31636_i0 PRJNA1159911 32177 468 25.281013 118.31514084 Giardia intestinalis assemblage B 1394984 Fornicata other_Eukaryota 47.8 0.00669   NR KWX13038.1 1394984 g31636 i0 37 0.467948717948718 73 42 44.2 2 366 160 103 175 KWX13038.1 Variant-specific surface protein [Giardia intestinalis assemblage B] diamond 219 47.8 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis
32506648 32506648 PRJNA1159911_P_NODE_41259_length_394_cov_1.109034_g40717_i0 PRJNA1159911 41259 394 1.109034 4.3695939600000004 Anaeramoeba ignava 1746090 Root_unresolved Root_unresolved 112 8.49e-27   NR KAJ5075607.1 1746090 g40717 i0 46.6 0.898477157360406 118 63 89.8 0 355 2 160 277 KAJ5075607.1 phosphopantetheine adenylyltransferase [Anaeramoeba ignava] diamond 354 112 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba ignava
32695556 32695556 PRJNA1159911_P_NODE_48620_length_353_cov_2.050000_g48078_i0 PRJNA1159911 48620 353 2.05 7.2365 Anaeramoeba ignava 1746090 Root_unresolved Root_unresolved 72.8 3.76e-12   NR KAJ5079322.1 1746090 g48078 i0 39.4 0.926345609065156 109 62 92.6 3 6 332 368 472 KAJ5079322.1 importin subunit alpha-4 [Anaeramoeba ignava] diamond 327 72.8 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba ignava

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;