RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1159911", tax_clade = "FCB group" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 6 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 6 ✖

bioproject 1

  • PRJNA1159911 · 6 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4866054 4866054 PRJNA1159911_P_NODE_87544_length_251_cov_0.865169_g87002_i0 PRJNA1159911 87544 251 0.865169 2.17157419 Salinibacter 146918 Bacteria Bacteria 267 7.459999999999999e-67   NTclustered gi|1419235469|gb|CP030716.1| 146919 g87002 i0 99.32 10.1195219123506 147 1 100 0 1 147 2529094 2529240 Salinibacter ruber strain P13 chromosome, complete genome blastn 2540 267 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Salinibacteraceae Salinibacter Salinibacter ruber
7961906 7961906 PRJNA1159911_P_NODE_87627_length_251_cov_0.865169_g87085_i0 PRJNA1159911 87627 251 0.865169 2.17157419 Salinibacter ruber 146919 Bacteria Bacteria 420 5.41e-113   NTclustered gi|1473073677|gb|CP030365.1| 146919 g87085 i0 96.813 1 251 8 100 0 1 251 46067 46317 Salinibacter ruber strain M1 plasmid pSR116, complete sequence blastn 251 420 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Salinibacteraceae Salinibacter Salinibacter ruber
18889578 18889578 PRJNA1159911_P_NODE_91295_length_248_cov_0.880000_g90753_i0 PRJNA1159911 91295 248 0.88 2.1824 Salinibacter 146918 Bacteria Bacteria 459 1.13e-124   NTclustered gi|1419235469|gb|CP030716.1| 146919 g90753 i0 100 9.99596774193548 248 0 100 0 1 248 432500 432747 Salinibacter ruber strain P13 chromosome, complete genome blastn 2479 459 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Salinibacteraceae Salinibacter Salinibacter ruber
19434337 19434337 PRJNA1159911_P_NODE_69476_length_285_cov_1.283019_g68934_i0 PRJNA1159911 69476 285 1.283019 3.65660415 Salinibacter ruber 146919 Bacteria Bacteria 516 7.77e-142   NTclustered gi|1419235469|gb|CP030716.1| 146919 g68934 i0 99.301 6.93684210526316 286 1 100 1 1 285 250144 249859 Salinibacter ruber strain P13 chromosome, complete genome blastn 1977 516 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Salinibacteraceae Salinibacter Salinibacter ruber
20164419 20164419 PRJNA1159911_P_NODE_94336_length_246_cov_0.890173_g93794_i0 PRJNA1159911 94336 246 0.890173 2.18982558 Salinibacter 146918 Bacteria Bacteria 444 3.14e-120   NTclustered gi|2805313919|gb|CP169425.1| 146919 g93794 i0 99.187 10 246 2 100 0 1 246 2991825 2992070 Salinibacter ruber strain M31T chromosome, complete genome blastn 2460 444 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Salinibacteraceae Salinibacter Salinibacter ruber
23990269 23990269 PRJNA1159911_P_NODE_88039_length_250_cov_1.491525_g87497_i0 PRJNA1159911 88039 250 1.491525 3.7288125 Salinibacter 146918 Bacteria Bacteria 169 2.15e-37   NTclustered gi|1419235469|gb|CP030716.1| 146919 g87497 i0 98.936 4.328 94 1 38 0 1 94 558740 558647 Salinibacter ruber strain P13 chromosome, complete genome blastn 1082 169 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Salinibacteraceae Salinibacter Salinibacter ruber

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;