RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1159911", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJNA1159911 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5410402 5410402 PRJNA1159911_P_NODE_19345_length_667_cov_7.222222_g18833_i0 PRJNA1159911 19345 667 7.222222 48.17222074 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 752 0   NTclustered gi|2874253728|emb|OY969570.1| 412054 g18833 i0 87.225 80.082458770614707 681 62 100 21 1 667 173215 172546 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 53415 752 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
6686603 6686603 PRJNA1159911_P_NODE_88366_length_250_cov_0.870056_g87824_i0 PRJNA1159911 88366 250 0.870056 2.17514 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 110 8.27e-28   NR MEO6527036.1 2026741 g87824 i0 63 2.916 81 30 97.2 0 6 248 153 233 MEO6527036.1 DUF4386 domain-containing protein [Gemmatimonadaceae bacterium] diamond 729 110 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
27261739 27261739 PRJNA1159911_P_NODE_73043_length_277_cov_1.117647_g72501_i0 PRJNA1159911 73043 277 1.117647 3.09588219 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 110 1.74e-27   NR HKG92673.1 2026741 g72501 i0 63 2.96750902527076 92 34 99.6 0 1 276 59 150 HKG92673.1 DUF4386 domain-containing protein [Gemmatimonadaceae bacterium] diamond 822 110 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
31208960 31208960 PRJNA1159911_P_NODE_100795_length_241_cov_1.119048_g100253_i0 PRJNA1159911 100795 241 1.119048 2.69690568 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 124 2.5599999999999997e-31   NR NUR34978.1 2026741 g100253 i0 82.1 1.95435684647303 78 14 97.1 0 239 6 391 468 NUR34978.1 vanadium-dependent haloperoxidase [Gemmatimonadaceae bacterium] diamond 471 124 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;