RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA1159911", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Discosea · 4 ✖

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA1159911 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24533332 24533332 PRJNA1159911_P_NODE_19800_length_656_cov_2.907376_g19287_i0 PRJNA1159911 19800 656 2.907376 19.07238656 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 341 6.38e-114   NR ACO50132.1 308475 g19287 i0 72.6 6.8734756097561 215 59 98.3 0 647 3 172 386 ACO50132.1 elongation factor 1 alpha, partial [Paramoeba branchiphila] diamond 4509 341 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba branchiphila
27861545 27861545 PRJNA1159911_P_NODE_70465_length_282_cov_2.296651_g69923_i0 PRJNA1159911 70465 282 2.296651 6.47655582 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 129 1.83e-33   NR XP_004358271.1 1257118 g69923 i0 68.5 3.87234042553191 92 25 97.9 2 277 2 326 413 XP_004358271.1 fumarylacetoacetase [Acanthamoeba castellanii str. Neff] diamond 1092 129 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27924833 27924833 PRJNA1159911_P_NODE_64985_length_296_cov_1.381166_g64443_i0 PRJNA1159911 64985 296 1.381166 4.08825136 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 42 0.0279   NR XP_004349513.1 1257118 g64443 i0 50 0.385135135135135 38 19 38.5 0 296 183 55 92 XP_004349513.1 uncharacterized protein ACA1_250420 [Acanthamoeba castellanii str. Neff] diamond 114 42 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28271925 28271925 PRJNA1159911_P_NODE_69526_length_285_cov_1.089623_g68984_i0 PRJNA1159911 69526 285 1.089623 3.10542555 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 111 2.78e-27   NR XP_004356622.1 1257118 g68984 i0 77.4 0.652631578947368 62 14 65.3 0 99 284 141 202 XP_004356622.1 mitochondrial phosphate transporter, putative [Acanthamoeba castellanii str. Neff] diamond 186 111 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;