RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

15 rows where bioproject = "PRJNA1159911" and tax_clade = "Amoebozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 15 ✖

bioproject 1

  • PRJNA1159911 · 15 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2858888 2858888 PRJNA1159911_P_NODE_55423_length_326_cov_1.094862_g54881_i0 PRJNA1159911 55423 326 1.094862 3.56925012 Dictyostelium purpureum 5786 Evosea other_Eukaryota 60.2 1.83e-4   NTclustered gi|330794161|ref|XM_003285101.1| 5786 g54881 i0 89.796 7.51840490797546 49 2 14 3 99 145 1420 1467 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_76102), partial mRNA blastn 2451 60.2 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
16885760 16885760 PRJNA1159911_P_NODE_86534_length_251_cov_2.044944_g85992_i0 PRJNA1159911 86534 251 2.044944 5.13280944 uncultured Amoebozoa 590481 Root_unresolved Root_unresolved 396 9.119999999999996e-106   NTclustered gi|221185864|gb|FJ577811.1| 590481 g85992 i0 97.046 77.9322709163347 237 3 94 4 10 244 1011 777 Uncultured Amoebozoa clone Ivry07 18S ribosomal RNA gene, partial sequence blastn 19561 396 1 Eukaryota Amoebozoa             uncultured Amoebozoa
20708492 20708492 PRJNA1159911_P_NODE_102077_length_238_cov_2.400000_g101535_i0 PRJNA1159911 102077 238 2.4 5.712 Entamoeba invadens 33085 Evosea other_Eukaryota 62.1 3.55e-5   NTclustered gi|511091352|dbj|AK423018.1| 33085 g101535 i0 78.723 14.2478991596639 94 18 39 2 101 193 857 765 Entamoeba invadens cDNA clone: Xei-008C04, hypothetical protein, complete cds, strain: IP1 blastn 3391 62.1 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba invadens
20709494 20709494 PRJNA1159911_P_NODE_60557_length_309_cov_1.305085_g60015_i0 PRJNA1159911 60557 309 1.305085 4.03271265 Corallomyxa tenera 438413 Root_unresolved Root_unresolved 149 3.1799999999999998e-40   NR ADK26623.1 438413 g60015 i0 63.7 1.99029126213592 102 36 99 1 309 4 143 243 ADK26623.1 elongation factor 2, partial [Corallomyxa tenera] diamond 615 149 1 Eukaryota Amoebozoa           Corallomyxa Corallomyxa tenera
24533332 24533332 PRJNA1159911_P_NODE_19800_length_656_cov_2.907376_g19287_i0 PRJNA1159911 19800 656 2.907376 19.07238656 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 341 6.38e-114   NR ACO50132.1 308475 g19287 i0 72.6 6.8734756097561 215 59 98.3 0 647 3 172 386 ACO50132.1 elongation factor 1 alpha, partial [Paramoeba branchiphila] diamond 4509 341 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba branchiphila
27439238 27439238 PRJNA1159911_P_NODE_70703_length_282_cov_1.315789_g70161_i0 PRJNA1159911 70703 282 1.315789 3.71052498 Dictyostelium 5782 Evosea other_Eukaryota 132 1.16e-33   NR XP_003288175.1 5786 g70161 i0 67.4 5.87234042553191 92 30 97.9 0 3 278 270 361 XP_003288175.1 threonyl-tRNA synthetase [Dictyostelium purpureum] diamond 1656 132 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
27754938 27754938 PRJNA1159911_P_NODE_71304_length_280_cov_2.478261_g70762_i0 PRJNA1159911 71304 280 2.478261 6.9391308 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 103 4.8999999999999986e-24   NR XP_004357690.1 261658 g70762 i0 68.8 3.42857142857143 64 20 68.6 0 279 88 318 381 XP_004357690.1 3-methyl-2-oxobutanoate dehydrogenase [Cavenderia fasciculata] diamond 960 103 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
27861545 27861545 PRJNA1159911_P_NODE_70465_length_282_cov_2.296651_g69923_i0 PRJNA1159911 70465 282 2.296651 6.47655582 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 129 1.83e-33   NR XP_004358271.1 1257118 g69923 i0 68.5 3.87234042553191 92 25 97.9 2 277 2 326 413 XP_004358271.1 fumarylacetoacetase [Acanthamoeba castellanii str. Neff] diamond 1092 129 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27924833 27924833 PRJNA1159911_P_NODE_64985_length_296_cov_1.381166_g64443_i0 PRJNA1159911 64985 296 1.381166 4.08825136 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 42 0.0279   NR XP_004349513.1 1257118 g64443 i0 50 0.385135135135135 38 19 38.5 0 296 183 55 92 XP_004349513.1 uncharacterized protein ACA1_250420 [Acanthamoeba castellanii str. Neff] diamond 114 42 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27956445 27956445 PRJNA1159911_P_NODE_90565_length_248_cov_1.760000_g90023_i0 PRJNA1159911 90565 248 1.76 4.3648 Dictyostelium discoideum AX4 352472 Evosea other_Eukaryota 52.8 1.16e-5   NR XP_629619.1 352472 g90023 i0 44 2.38306451612903 50 28 60.5 0 25 174 586 635 XP_629619.1 GTP-binding protein 1 [Dictyostelium discoideum AX4] diamond 591 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
28271925 28271925 PRJNA1159911_P_NODE_69526_length_285_cov_1.089623_g68984_i0 PRJNA1159911 69526 285 1.089623 3.10542555 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 111 2.78e-27   NR XP_004356622.1 1257118 g68984 i0 77.4 0.652631578947368 62 14 65.3 0 99 284 141 202 XP_004356622.1 mitochondrial phosphate transporter, putative [Acanthamoeba castellanii str. Neff] diamond 186 111 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29440058 29440058 PRJNA1159911_P_NODE_94570_length_245_cov_2.110465_g94028_i0 PRJNA1159911 94570 245 2.110465 5.17063925 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 58.9 4.8e-9   NR KAH3756107.1 1580589 g94028 i0 43.5 0.759183673469388 62 33 73.5 1 181 2 3 64 KAH3756107.1 hypothetical protein Pelo_12095 [Pelomyxa schiedti] diamond 186 58.9 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
29977190 29977190 PRJNA1159911_P_NODE_91971_length_247_cov_1.735632_g91429_i0 PRJNA1159911 91971 247 1.735632 4.28701104 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 137 3.57e-38   NR KAH3761122.1 1580589 g91429 i0 78 3.8502024291498 82 16 99.6 1 247 2 110 189 KAH3761122.1 20S proteasome subunit alpha 3 [Pelomyxa schiedti] diamond 951 137 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
30533583 30533583 PRJNA1159911_P_NODE_100993_length_241_cov_0.916667_g100451_i0 PRJNA1159911 100993 241 0.916667 2.20916747 Eumycetozoa 142796 Evosea other_Eukaryota 52 1.94e-5   NR XP_004354927.1 261658 g100451 i0 59.1 1.71784232365145 44 18 54.8 0 108 239 78 121 XP_004354927.1 ABC transporter D family protein [Cavenderia fasciculata] diamond 414 52 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
32000218 32000218 PRJNA1159911_P_NODE_78338_length_266_cov_1.196891_g77796_i0 PRJNA1159911 78338 266 1.196891 3.18373006 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 52 2.59e-5   NR KAH3758824.1 1580589 g77796 i0 33.3 0.947368421052632 84 55 94.7 1 261 10 273 355 KAH3758824.1 hypothetical protein Pelo_9343 [Pelomyxa schiedti] diamond 252 52 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;