RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA1158727" and tax_phylum = "Ignavibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1158727 · 5 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26870127 26870127 PRJNA1158727_P_NODE_67481_length_385_cov_2.221154_g60020_i0 PRJNA1158727 67481 385 2.221154 8.5514429 Pseudomonadati 3379134 Bacteria Bacteria 236 2.78e-76   NR WP_014558987.1 591197 g60020 i0 87.4 3.93506493506493 127 16 99 0 383 3 138 264 WP_014558987.1 VOC family protein [Ignavibacterium album] diamond 1515 236 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Ignavibacteriaceae Ignavibacterium Ignavibacterium album
30103395 30103395 PRJNA1158727_P_NODE_45712_length_543_cov_2.568085_g38275_i0 PRJNA1158727 45712 543 2.568085 13.94470155 Ignavibacteriaceae bacterium 2651163 Bacteria Bacteria 128 2.59e-32   NR MBE2280156.1 2651163 g38275 i0 46.2 0.801104972375691 145 78 80.1 0 10 444 187 331 MBE2280156.1 NAD(P)-dependent alcohol dehydrogenase [Ignavibacteriaceae bacterium] diamond 435 128 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Ignavibacteriaceae   Ignavibacteriaceae bacterium
31367735 31367735 PRJNA1158727_P_NODE_154576_length_244_cov_0.900585_g147114_i0 PRJNA1158727 154576 244 0.900585 2.1974274 Ignavibacteria bacterium 2053306 Bacteria Bacteria 76.6 3.26e-14   NR MCU0372825.1 2053306 g147114 i0 63 0.663934426229508 54 20 66.4 0 81 242 1 54 MCU0372825.1 lytic transglycosylase domain-containing protein [Ignavibacteria bacterium] diamond 162 76.6 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
31482099 31482099 PRJNA1158727_P_NODE_141296_length_249_cov_0.875000_g133834_i0 PRJNA1158727 141296 249 0.875 2.17875 Pseudomonadati 3379134 Bacteria Bacteria 148 5.15e-41   NR WP_304132425.1 591197 g133834 i0 79.3 2.96385542168675 82 17 98.8 0 248 3 79 160 WP_304132425.1 hypothetical protein [Ignavibacterium album] diamond 738 148 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Ignavibacteriaceae Ignavibacterium Ignavibacterium album
31936746 31936746 PRJNA1158727_P_NODE_152417_length_245_cov_0.895349_g144955_i0 PRJNA1158727 152417 245 0.895349 2.19360505 Ignavibacteria bacterium 2053306 Bacteria Bacteria 129 1.59e-33   NR HPS64254.1 2053306 g144955 i0 77.8 0.991836734693878 81 18 99.2 0 3 245 216 296 HPS64254.1 hypothetical protein [Ignavibacteria bacterium] diamond 243 129 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;