RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1158727", tax_phylum = "Cressdnaviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 2 ✖

tax_phylum 1

  • Cressdnaviricota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1158727 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16883523 16883523 PRJNA1158727_P_NODE_79094_length_342_cov_1.576208_g71633_i0 PRJNA1158727 79094 342 1.576208 5.39063136 Mastrevirus virgati 3430739 Viruses Viruses 544 4.38e-150   NTclustered gi|731188570|ref|NC_025834.1| 1571533 g71633 i0 95.335 2.95906432748538 343 15 100 1 1 342 795 1137 Switchgrass mosaic-associated virus 1 isolate Cloud Nine movement protein, capsid protein, replication-associated protein RepB, and replication-associated protein genes, complete cds blastn 1012 544 1 Viruses   Shotokuvirae Cressdnaviricota Repensiviricetes Geplafuvirales Geminiviridae Mastrevirus Mastrevirus virgati
24532724 24532724 PRJNA1158727_P_NODE_89440_length_314_cov_3.091286_g81979_i0 PRJNA1158727 89440 314 3.091286 9.70663804 Mastrevirus virgati 3430739 Viruses Viruses 418 2.51e-112   NTclustered gi|698835081|gb|KJ957193.1| 1571533 g81979 i0 95.437 3.11146496815287 263 11 100 1 1 263 663 924 Switchgrass mosaic-associated virus 1 isolate Cloud Nine capsid protein gene, partial cds; and movement protein gene, complete cds blastn 977 418 1 Viruses   Shotokuvirae Cressdnaviricota Repensiviricetes Geplafuvirales Geminiviridae Mastrevirus Mastrevirus virgati

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;