RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA1158727" and tax_phylum = "Armatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1158727 · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24530006 24530006 PRJNA1158727_P_NODE_143760_length_248_cov_0.880000_g136298_i0 PRJNA1158727 143760 248 0.88 2.1824 Armatimonadota bacterium 2033014 Bacteria Bacteria 220 5.81e-53   NTclustered gi|2314718026|dbj|AP024674.1| 2033014 g136298 i0 93.836 317.076612903226 146 9 59 0 1 146 1692731 1692876 MAG: Armatimonadetes bacterium KatS3mg024 DNA, complete genome blastn 78635 220 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
26692056 26692056 PRJNA1158727_P_NODE_112381_length_276_cov_1.980296_g104920_i0 PRJNA1158727 112381 276 1.980296 5.46561696 Armatimonadia bacterium 2663015 Bacteria Bacteria 52.8 1.37e-6   NR MEN6302474.1 2663015 g104920 i0 40.7 0.641304347826087 59 34 64.1 1 80 256 1 58 MEN6302474.1 hypothetical protein [Armatimonadia bacterium] diamond 177 52.8 1 Bacteria   Bacillati Armatimonadota Armatimonadia       Armatimonadia bacterium
27912347 27912347 PRJNA1158727_P_NODE_101365_length_290_cov_1.958525_g93904_i0 PRJNA1158727 101365 290 1.958525 5.6797225 Bacillati 1783272 Bacteria Bacteria 126 1.64e-32   NR MBI3998004.1 2033014 g93904 i0 72.9 11.8551724137931 96 26 99.3 0 288 1 118 213 MBI3998004.1 response regulator [Armatimonadota bacterium] diamond 3438 126 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
30861830 30861830 PRJNA1158727_P_NODE_126234_length_260_cov_1.647059_g118773_i0 PRJNA1158727 126234 260 1.647059 4.2823534 Armatimonadota bacterium 2033014 Bacteria Bacteria 110 7.150000000000001e-27   NR MES2460765.1 2033014 g118773 i0 69.2 0.9 78 24 90 0 1 234 238 315 MES2460765.1 CdaR family protein [Armatimonadota bacterium] diamond 234 110 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
32903746 32903746 PRJNA1158727_P_NODE_166880_length_228_cov_2.709677_g159418_i0 PRJNA1158727 166880 228 2.709677 6.17806356 FCB group 1783270 Bacteria Bacteria 68.2 3.43e-11   NR MFP4249318.1 2033014 g159418 i0 55.2 1.81578947368421 67 29 88.2 1 13 213 424 489 MFP4249318.1 PQQ-binding-like beta-propeller repeat protein [Armatimonadota bacterium] diamond 414 68.2 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;