RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA1158727", tax_kingdom = "Thermotogati" and tax_phylum = "Synergistota"

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tax_superkingdom 1

tax_phylum 1

  • Synergistota · 1 ✖

tax_kingdom 1

  • Thermotogati · 1 ✖

bioproject 1

  • PRJNA1158727 · 1 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24529619 24529619 PRJNA1158727_P_NODE_125000_length_261_cov_3.377660_g117539_i0 PRJNA1158727 125000 261 3.37766 8.8156926 Fretibacterium fastidiosum 651822 Bacteria Bacteria 460 3.3399999999999995e-125   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g117539 i0 98.467 59.3065134099617 261 4 100 0 1 261 68661 68401 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 15479 460 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;