RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

30 rows where bioproject = "PRJNA1158727", tax_clade = "core chlorophytes" and tax_kingdom = "Viridiplantae"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Viridiplantae · 30 ✖

tax_clade 1

  • core chlorophytes · 30 ✖

bioproject 1

  • PRJNA1158727 · 30 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
303882 303882 PRJNA1158727_P_NODE_136421_length_251_cov_0.865169_g128959_i0 PRJNA1158727 136421 251 0.865169 2.17157419 Volvox carteri 3067 Plants Plants 56.5 0.002   NTclustered gi|302836298|ref|XM_002949664.1| 3068 g128959 i0 100 0.119521912350598 30 0 12 0 170 199 1752 1781 Volvox carteri f. nagariensis phosphate acetyltransferase (VOLCADRAFT_117292), partial mRNA blastn 30 56.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
1037445 1037445 PRJNA1158727_P_NODE_119681_length_268_cov_0.974359_g112220_i0 PRJNA1158727 119681 268 0.974359 2.61128212 Eukaryota 2759 Plants Plants 171 6.489999999999999e-38   NTclustered gi|969822372|gb|KT950953.1| 3129 g112220 i0 80.444 49.9813432835821 225 42 84 2 1 224 517 740 Bryopsis maxima actin gene, partial cds blastn 13395 172 0.994186046511628 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Bryopsidaceae Bryopsis Bryopsis maxima
1581614 1581614 PRJNA1158727_P_NODE_97282_length_298_cov_1.368889_g89821_i0 PRJNA1158727 97282 298 1.368889 4.07928922 Raphidocelis subcapitata 307507 Plants Plants 110 1.3800000000000002e-27   NR GBF93314.1 307507 g89821 i0 61.2 5.05369127516779 85 32 85.6 1 43 297 1 84 GBF93314.1 60S ribosomal protein L10a [Raphidocelis subcapitata] diamond 1506 110 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Raphidocelis Raphidocelis subcapitata
2312669 2312669 PRJNA1158727_P_NODE_107542_length_282_cov_2.272727_g100081_i0 PRJNA1158727 107542 282 2.272727 6.40909014 Coccomyxa 41891 Plants Plants 329 1.07e-85   NTclustered gi|1360638129|gb|AC277064.1| 574566 g100081 i0 87.943 99.4255319148936 282 31 100 1 1 282 1300 1022 Coccomyxa subellipsoidea C-169 clone FAHX137-B20, complete sequence blastn 28038 329 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
5406983 5406983 PRJNA1158727_P_NODE_137985_length_250_cov_0.870056_g130523_i0 PRJNA1158727 137985 250 0.870056 2.17514 Ostreobium quekettii 121088 Plants Plants 98.2 8.809999999999999e-24   NR CAD7697746.1 121088 g130523 i0 65.7 15.048 70 24 84 0 250 41 50 119 CAD7697746.1 unnamed protein product [Ostreobium quekettii] diamond 3762 98.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Ostreobiaceae Ostreobium Ostreobium quekettii
7957283 7957283 PRJNA1158727_P_NODE_149987_length_246_cov_0.890173_g142525_i0 PRJNA1158727 149987 246 0.890173 2.18982558 Chlorella sorokiniana 3076 Plants Plants 82.8 1.13e-17   NR PRW56423.1 3076 g142525 i0 85.4 3.60975609756098 48 7 58.5 0 244 101 109 156 PRW56423.1 nitrogen fixation nifu [Chlorella sorokiniana] diamond 888 82.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sorokiniana
10507202 10507202 PRJNA1158727_P_NODE_115729_length_272_cov_1.728643_g108268_i0 PRJNA1158727 115729 272 1.728643 4.70190896 Symbiochloris sp. 3076140 Plants Plants 503 5.729999999999998e-138   NTclustered gi|2819195128|gb|PQ456139.1| 3076140 g108268 i0 100 101.323529411765 272 0 100 0 1 272 557 828 Symbiochloris sp. voucher A160 small subunit ribosomal RNA gene, partial sequence blastn 27560 503 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Symbiochloris Symbiochloris sp.
10508072 10508072 PRJNA1158727_P_NODE_158649_length_242_cov_2.189349_g151187_i0 PRJNA1158727 158649 242 2.189349 5.29822458 Volvox carteri f. nagariensis 3068 Plants Plants 88.2 3.69e-18   NR XP_002945867.1 3068 g151187 i0 67.9 3.3595041322314 56 18 69.4 0 2 169 491 546 XP_002945867.1 uncharacterized protein VOLCADRAFT_120224 [Volvox carteri f. nagariensis] diamond 813 88.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
15065250 15065250 PRJNA1158727_P_NODE_149232_length_246_cov_0.890173_g141770_i0 PRJNA1158727 149232 246 0.890173 2.18982558 Eukaryota 2759 Plants Plants 140 5.98e-41   NR WIA40893.1 3088 g141770 i0 81.3 3.90243902439024 80 15 97.6 0 6 245 46 125 WIA40893.1 hypothetical protein OEZ86_004555 [Tetradesmus obliquus] diamond 960 141 0.99290780141844 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus obliquus
15065486 15065486 PRJNA1158727_P_NODE_82492_length_332_cov_1.957529_g75031_i0 PRJNA1158727 82492 332 1.957529 6.49899628 Chlorophyta 3041 Plants Plants 348 3.56e-91   NTclustered gi|371782093|emb|HE610125.1| 37433 g75031 i0 85.928 99.7861445783133 334 37 100 9 1 332 4956 4631 Stichococcus bacillaris 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 379-2 blastn 33129 350 0.994285714285714 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris
18158693 18158693 PRJNA1158727_P_NODE_98135_length_296_cov_2.053812_g90674_i0 PRJNA1158727 98135 296 2.053812 6.07928352 Symbiochloris symbiontica 531392 Plants Plants 464 2.98e-126   NTclustered gi|922575251|gb|JQ921011.1| 531392 g90674 i0 94.949 102.831081081081 297 13 100 2 1 296 1635 1340 Dictyochloropsis symbiontica strain SAG 27.81 23S large subunit ribosomal RNA gene, partial sequence; chloroplast blastn 30438 464 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Symbiochloris Symbiochloris symbiontica
18889367 18889367 PRJNA1158727_P_NODE_94715_length_303_cov_1.673913_g87254_i0 PRJNA1158727 94715 303 1.673913 5.07195639 Marvania 97104 Plants Plants 209 1.58e-49   NTclustered gi|157060281|dbj|AB292587.1| 97105 g87254 i0 79.402 80.5115511551155 301 58 99 4 4 302 323 621 Marvania geminata gene for actin, partial cds blastn 24395 209 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Marvania Marvania geminata
26711158 26711158 PRJNA1158727_P_NODE_144561_length_248_cov_0.880000_g137099_i0 PRJNA1158727 144561 248 0.88 2.1824 Chlorophyceae 3166 Plants Plants 50.8 5.39e-5   NR WIA39894.1 3088 g137099 i0 36.3 1.94758064516129 80 46 90.7 2 237 13 175 254 WIA39894.1 hypothetical protein OEZ86_013336 [Tetradesmus obliquus] diamond 483 51.2 0.9921875 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus obliquus
26806518 26806518 PRJNA1158727_P_NODE_133781_length_252_cov_1.396648_g126320_i0 PRJNA1158727 133781 252 1.396648 3.51955296 Eukaryota 2759 Plants Plants 69.3 1.85e-11   NR CAD7701516.1 121088 g126320 i0 62 13.047619047619 50 19 59.5 0 103 252 468 517 CAD7701516.1 unnamed protein product [Ostreobium quekettii] diamond 3288 69.3 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Ostreobiaceae Ostreobium Ostreobium quekettii
26976995 26976995 PRJNA1158727_P_NODE_141622_length_249_cov_0.875000_g134160_i0 PRJNA1158727 141622 249 0.875 2.17875 Edaphochlamys debaryana 47281 Plants Plants 82 8.57e-17   NR KAG2484470.1 47281 g134160 i0 77.1 2.89156626506024 48 11 57.8 0 104 247 6 53 KAG2484470.1 hypothetical protein HYH03_016704 [Edaphochlamys debaryana] diamond 720 82 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales   Edaphochlamys Edaphochlamys debaryana
27040376 27040376 PRJNA1158727_P_NODE_148822_length_246_cov_0.890173_g141360_i0 PRJNA1158727 148822 246 0.890173 2.18982558 Chlamydomonas eustigma 1157962 Plants Plants 77.8 1.62e-14   NR GAX78472.1 1157962 g141360 i0 90.5 1.02439024390244 42 4 51.2 0 2 127 422 463 GAX78472.1 hypothetical protein CEUSTIGMA_g5911.t1 [Chlamydomonas eustigma] diamond 252 77.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas eustigma
27704105 27704105 PRJNA1158727_P_NODE_146544_length_247_cov_0.885057_g139082_i0 PRJNA1158727 146544 247 0.885057 2.18609079 Pedinophyceae sp. YPF-7 765719 Plants Plants 122 2.9e-30   NR CAG9459956.1 765719 g139082 i0 74.1 1.96761133603239 81 21 98.4 0 3 245 417 497 CAG9459956.1 unnamed protein product [Pedinophyceae sp. YPF-701] diamond 486 122 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Pedinophyceae       Pedinophyceae sp. YPF-701
27975663 27975663 PRJNA1158727_P_NODE_126405_length_260_cov_1.529412_g118944_i0 PRJNA1158727 126405 260 1.529412 3.9764712 Chlamydomonas 3052 Plants Plants 125 4.8699999999999997e-32   NR GAX78084.1 1157962 g118944 i0 61 4.73076923076923 82 32 94.6 0 1 246 311 392 GAX78084.1 hypothetical protein CEUSTIGMA_g5526.t1 [Chlamydomonas eustigma] diamond 1230 125 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas eustigma
28335212 28335212 PRJNA1158727_P_NODE_157246_length_243_cov_0.905882_g149784_i0 PRJNA1158727 157246 243 0.905882 2.20129326 Coccomyxa viridis 1274662 Plants Plants 56.6 4.77e-7   NR CAK0787458.1 1274662 g149784 i0 50 0.987654320987654 80 31 97.5 3 242 6 125 196 CAK0787458.1 hypothetical protein CVIRNUC_010678 [Coccomyxa viridis] diamond 240 56.6 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa viridis
28461744 28461744 PRJNA1158727_P_NODE_112186_length_277_cov_1.004902_g104725_i0 PRJNA1158727 112186 277 1.004902 2.78357854 Tetradesmus obliquus 3088 Plants Plants 77.8 1.39e-16   NR WIA13555.1 3088 g104725 i0 54.4 0.855595667870036 79 34 85.6 1 30 266 1 77 WIA13555.1 hypothetical protein OEZ85_007123 [Tetradesmus obliquus] diamond 237 77.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus obliquus
28935211 28935211 PRJNA1158727_P_NODE_131368_length_254_cov_2.696133_g123907_i0 PRJNA1158727 131368 254 2.696133 6.84817782 Dunaliella salina 3046 Plants Plants 53.5 1.65e-6   NR KAF5826335.1 3046 g123907 i0 45 2.71653543307087 60 33 70.9 0 180 1 15 74 KAF5826335.1 ATP synthase subunit-domain-containing protein [Dunaliella salina] diamond 690 53.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Dunaliellaceae Dunaliella Dunaliella salina
29439975 29439975 PRJNA1158727_P_NODE_101290_length_290_cov_2.470046_g93829_i0 PRJNA1158727 101290 290 2.470046 7.1631334 Massjukichlorella minus 2650457 Plants Plants 76.6 7.79e-14   NR YP_010732068.1 2650457 g93829 i0 80.5 0.837931034482759 41 8 42.4 0 290 168 279 319 YP_010732068.1 beta subunit of acetyl-CoA carboxylase carboxytransferase [Massjukichlorella minus] diamond 243 76.6 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Massjukichlorella Massjukichlorella minus
29439976 29439976 PRJNA1158727_P_NODE_101670_length_290_cov_1.387097_g94209_i0 PRJNA1158727 101670 290 1.387097 4.0225813 Apatococcus lobatus 904363 Plants Plants 63.5 1.13e-9   NR KAK9816216.1 904363 g94209 i0 51.8 5.11034482758621 56 26 56.9 1 284 120 44 99 KAK9816216.1 hypothetical protein WJX74_009459 [Apatococcus lobatus] diamond 1482 63.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Apatococcus Apatococcus lobatus
29503353 29503353 PRJNA1158727_P_NODE_76890_length_349_cov_1.557971_g69429_i0 PRJNA1158727 76890 349 1.557971 5.43731879 [Myrmecia] bisecta 41462 Plants Plants 154 3.78e-41   NR KAK9817796.1 41462 g69429 i0 64.7 1.98567335243553 116 41 99.7 0 349 2 520 635 KAK9817796.1 hypothetical protein WJX72_002302 [[Myrmecia] bisecta] diamond 693 154 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Myrmecia [Myrmecia] bisecta
29933518 29933518 PRJNA1158727_P_NODE_111851_length_277_cov_1.509804_g104390_i0 PRJNA1158727 111851 277 1.509804 4.18215708 Chlorella 3071 Plants Plants 45.4 0.00626   NR PRW60855.1 3076 g104390 i0 35.5 2.46931407942238 76 45 82.3 1 50 277 14 85 PRW60855.1 vacuolar sorting-associated VTA1-like protein [Chlorella sorokiniana] diamond 684 45.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sorokiniana
30293523 30293523 PRJNA1158727_P_NODE_150792_length_245_cov_1.534884_g143330_i0 PRJNA1158727 150792 245 1.534884 3.7604658 Coccomyxa elongata 1965095 Plants Plants 89.4 2.5e-19   NR CAL8460591.1 1965095 g143330 i0 51.3 0.930612244897959 76 37 93.1 0 18 245 9 84 CAL8460591.1 g120 [Coccomyxa elongata] diamond 228 89.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa elongata
31671500 31671500 PRJNA1158727_P_NODE_87997_length_318_cov_1.257143_g80536_i0 PRJNA1158727 87997 318 1.257143 3.99771474 Chlorophyta 3041 Plants Plants 110 9.08e-27   NR PNH08135.1 47790 g80536 i0 54.9 5.10377358490566 91 41 85.8 0 275 3 27 117 PNH08135.1 Hypersensitive-induced response protein 3 [Tetrabaena socialis] diamond 1623 111 0.990990990990991 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Tetrabaenaceae Tetrabaena Tetrabaena socialis
32114603 32114603 PRJNA1158727_P_NODE_111638_length_277_cov_1.965686_g104177_i0 PRJNA1158727 111638 277 1.965686 5.44495022 Eukaryota 2759 Plants Plants 88.6 3.89e-18   NR KAK2078170.1 3111 g104177 i0 56.8 3.04332129963899 74 29 80.1 1 276 55 401 471 KAK2078170.1 hypothetical protein QBZ16_004038 [Prototheca wickerhamii] diamond 843 89.4 0.991051454138702 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca wickerhamii
32663972 32663972 PRJNA1158727_P_NODE_144340_length_248_cov_0.880000_g136878_i0 PRJNA1158727 144340 248 0.88 2.1824 Chlamydomonas reinhardtii 3055 Plants Plants 62 6.3e-9   NR XP_042925396.1 3055 g136878 i0 50 0.798387096774194 66 32 79.8 1 3 200 396 460 XP_042925396.1 uncharacterized protein CHLRE_04g227900v5 [Chlamydomonas reinhardtii] diamond 198 62 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
32884441 32884441 PRJNA1158727_P_NODE_74980_length_355_cov_2.953901_g67519_i0 PRJNA1158727 74980 355 2.953901 10.48634855 Chlamydomonas eustigma 1157962 Plants Plants 150 1.7499999999999998e-42   NR GAX80767.1 1157962 g67519 i0 68.3 1.68169014084507 101 32 85.4 0 355 53 180 280 GAX80767.1 hypothetical protein CEUSTIGMA_g8202.t1 [Chlamydomonas eustigma] diamond 597 150 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas eustigma

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;