RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1158727", tax_clade = "PVC group" and tax_phylum = "Kiritimatiellota"

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tax_superkingdom 1

tax_phylum 1

  • Kiritimatiellota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA1158727 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26850649 26850649 PRJNA1158727_P_NODE_149441_length_246_cov_0.890173_g141979_i0 PRJNA1158727 149441 246 0.890173 2.18982558 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 94.7 2.13e-21   NR MDE0840008.1 2212473 g141979 i0 100 0.597560975609756 49 0 59.8 0 148 2 1 49 MDE0840008.1 outer membrane lipoprotein-sorting protein [Kiritimatiellia bacterium] diamond 147 94.7 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium
27830041 27830041 PRJNA1158727_P_NODE_79204_length_342_cov_1.144981_g71743_i0 PRJNA1158727 79204 342 1.144981 3.91583502 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 93.2 7.900000000000001e-22   NR MDE0838355.1 2212473 g71743 i0 100 0.394736842105263 45 0 39.5 0 207 341 1 45 MDE0838355.1 hypothetical protein [Kiritimatiellia bacterium] diamond 135 93.2 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium
29093174 29093174 PRJNA1158727_P_NODE_154868_length_244_cov_0.900585_g147406_i0 PRJNA1158727 154868 244 0.900585 2.1974274 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 150 1.23e-42   NR MDE0838356.1 2212473 g147406 i0 100 0.983606557377049 80 0 98.4 0 3 242 205 284 MDE0838356.1 type II secretion system minor pseudopilin GspK [Kiritimatiellia bacterium] diamond 240 150 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium
31272661 31272661 PRJNA1158727_P_NODE_142375_length_248_cov_1.760000_g134913_i0 PRJNA1158727 142375 248 1.76 4.3648 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 151 2.02e-44   NR MDE0840009.1 2212473 g134913 i0 100 0.991935483870968 82 0 99.2 0 1 246 94 175 MDE0840009.1 MMPL family transporter [Kiritimatiellia bacterium] diamond 246 151 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;