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contig_metadata

19 rows where bioproject = "PRJNA1158727", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 19 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 19 ✖

bioproject 1

  • PRJNA1158727 · 19 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1578740 1578740 PRJNA1158727_P_NODE_148022_length_246_cov_1.537572_g140560_i0 PRJNA1158727 148022 246 1.537572 3.78242712 Caenorhabditis elegans 6239 Nematoda Nematoda 52.8 0.022   NTclustered gi|687865899|emb|LK927846.1| 6239 g140560 i0 100 0.227642276422764 28 0 11 0 50 77 80350 80323 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000274 blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
2857676 2857676 PRJNA1158727_P_NODE_92843_length_307_cov_1.948718_g85382_i0 PRJNA1158727 92843 307 1.948718 5.98256426 Trichuris suis 68888 Nematoda Nematoda 159 8.93e-46   NR KHJ48313.1 68888 g85382 i0 75.2 1.97394136807818 101 25 98.7 0 304 2 57 157 KHJ48313.1 ribosomal protein S2 [Trichuris suis] diamond 606 159 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
6681821 6681821 PRJNA1158727_P_NODE_139746_length_249_cov_1.738636_g132284_i0 PRJNA1158727 139746 249 1.738636 4.32920364 Pristionchus sp. 15 RS5229 452809 Nematoda Nematoda 128 3.64e-25   NTclustered gi|150984457|gb|EF634871.1| 452809 g132284 i0 76.096 5.10441767068273 251 56 100 3 1 249 266 18 Pristionchus sp. 15 RS5229 small subunit ribosomal protein 8 (rps-8) mRNA, partial cds blastn 1271 128 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 15 RS5229
6684768 6684768 PRJNA1158727_P_NODE_95806_length_301_cov_1.350877_g88345_i0 PRJNA1158727 95806 301 1.350877 4.06613977 Meloidogyne graminicola 189291 Nematoda Nematoda 77.8 1.33e-14   NR AVZ46778.1 189291 g88345 i0 56.6 0.757475083056478 76 32 74.8 1 295 71 171 246 AVZ46778.1 hypothetical protein [Meloidogyne graminicola] diamond 228 77.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne graminicola
10507311 10507311 PRJNA1158727_P_NODE_120849_length_266_cov_1.632124_g113388_i0 PRJNA1158727 120849 266 1.632124 4.34144984 Pristionchus hoplostomus 1355913 Nematoda Nematoda 167 8.33e-37   NTclustered gi|524845312|gb|KC819366.1| 1355913 g113388 i0 81.166 46.4285714285714 223 28 81 11 32 247 49 264 Pristionchus hoplostomus strain JU1090 subunit ribosomal protein 20 (rps-20) mRNA, partial cds blastn 12350 167 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus hoplostomus
12516291 12516291 PRJNA1158727_P_NODE_156850_length_243_cov_0.905882_g149388_i0 PRJNA1158727 156850 243 0.905882 2.20129326 Pristionchus 54125 Nematoda Nematoda 130 9.84e-26   NTclustered gi|150984517|gb|EF634901.1| 376546 g149388 i0 80.769 4.54320987654321 182 21 72 13 10 184 264 90 Pristionchus marianneae small subunit ribosomal protein 20 (rps-20) mRNA, complete cds blastn 1104 130 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus marianneae
18155707 18155707 PRJNA1158727_P_NODE_139415_length_249_cov_2.625000_g131953_i0 PRJNA1158727 139415 249 2.625 6.53625 Metazoa 33208 Nematoda Nematoda 79.7 4.56e-17   NR ACV21053.1 96661 g131953 i0 58.8 4.85542168674699 80 33 96.4 0 9 248 6 85 ACV21053.1 large subunit ribosomal protein 35, partial [Rhabditoides inermis] diamond 1209 80.5 0.990062111801242 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Rhabditoides Rhabditoides inermis
18157554 18157554 PRJNA1158727_P_NODE_55995_length_451_cov_3.161376_g48535_i0 PRJNA1158727 55995 451 3.161376 14.25780576 Caenorhabditis briggsae 6238 Nematoda Nematoda 348 4.980000000000001e-91   NTclustered gi|268559799|ref|XM_002646027.1| 6238 g48535 i0 85.801 72.9778270509978 331 43 73 4 2 330 979 1307 Caenorhabditis briggsae Protein CBG07939 (CBG07939), partial mRNA blastn 32913 348 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
19429940 19429940 PRJNA1158727_P_NODE_136976_length_250_cov_1.740113_g129514_i0 PRJNA1158727 136976 250 1.740113 4.3502825 Panagrolaimus sp. 2726203 Nematoda Nematoda 211 3.53e-50   NTclustered gi|2491200846|gb|OQ842736.1| 2726203 g129514 i0 82.308 63.556 260 31 99 14 1 249 873 1128 Panagrolaimus sp. isolate NJdiseased small subunit ribosomal RNA gene, partial sequence blastn 15889 211 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Panagrolaimus Panagrolaimus sp.
19432580 19432580 PRJNA1158727_P_NODE_84016_length_328_cov_1.925490_g76555_i0 PRJNA1158727 84016 328 1.92549 6.3156072 Globodera rostochiensis 31243 Nematoda Nematoda 54.7 0.009   NTclustered gi|44843528|gb|AY426767.1| 31243 g76555 i0 100 0.0884146341463415 29 0 9 0 107 135 1866 1894 Globodera rostochiensis matrix metalloproteinase mRNA, complete cds blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Globodera Globodera rostochiensis
23255372 23255372 PRJNA1158727_P_NODE_102219_length_289_cov_1.620370_g94758_i0 PRJNA1158727 102219 289 1.62037 4.6828693 Levipalatum texanum 1486449 Nematoda Nematoda 200 9.03e-47   NTclustered gi|610559467|gb|KJ395558.1| 1486449 g94758 i0 82.158 3.62975778546713 241 35 82 6 24 260 148 384 Levipalatum texanum ribosomal protein (rpl-23) gene, partial cds blastn 1049 200 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Levipalatum Levipalatum texanum
26723295 26723295 PRJNA1158727_P_NODE_53581_length_470_cov_1.357683_g46123_i0 PRJNA1158727 53581 470 1.357683 6.3811101 Meloidogyne graminicola 189291 Nematoda Nematoda 60.5 1.71e-7   NR AVZ46778.1 189291 g46123 i0 32.8 0.817021276595745 128 86 81.7 0 385 2 117 244 AVZ46778.1 hypothetical protein [Meloidogyne graminicola] diamond 384 60.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne graminicola
27217494 27217494 PRJNA1158727_P_NODE_165862_length_233_cov_2.431250_g158400_i0 PRJNA1158727 165862 233 2.43125 5.6648125 root 1 Root_unresolved Root_unresolved 124 1.3199999999999999e-31   NR VDM25769.1 6265 g158400 i0 80.5 112.030042918455 77 12 99.1 1 2 232 19 92 VDM25769.1 unnamed protein product [Toxocara canis] diamond 26103 125 0.992 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis
28366661 28366661 PRJNA1158727_P_NODE_163346_length_241_cov_0.916667_g155884_i0 PRJNA1158727 163346 241 0.916667 2.20916747 Meloidogyne enterolobii 390850 Nematoda Nematoda 49.3 3.61e-5   NR CAD2161858.1 390850 g155884 i0 44 0.622406639004149 50 28 62.2 0 239 90 71 120 CAD2161858.1 unnamed protein product [Meloidogyne enterolobii] diamond 150 49.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne enterolobii
28493215 28493215 PRJNA1158727_P_NODE_85527_length_324_cov_1.840637_g78066_i0 PRJNA1158727 85527 324 1.840637 5.96366388 Meloidogyne graminicola 189291 Nematoda Nematoda 45.4 0.0095   NR AVZ46778.1 189291 g78066 i0 51.1 0.416666666666667 45 22 41.7 0 181 315 117 161 AVZ46778.1 hypothetical protein [Meloidogyne graminicola] diamond 135 45.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne graminicola
29314037 29314037 PRJNA1158727_P_NODE_129629_length_256_cov_2.306011_g122168_i0 PRJNA1158727 129629 256 2.306011 5.90338816 Halicephalobus sp. NKZ332 2598192 Nematoda Nematoda 54.7 2e-6   NR KAE9555014.1 2598192 g122168 i0 83.3 0.3515625 30 5 35.2 0 166 255 27 56 KAE9555014.1 hypothetical protein FO519_001760 [Halicephalobus sp. NKZ332] diamond 90 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Halicephalobus Halicephalobus sp. NKZ332
31082993 31082993 PRJNA1158727_P_NODE_113555_length_275_cov_1.356436_g106094_i0 PRJNA1158727 113555 275 1.356436 3.730199 Meloidogyne enterolobii 390850 Nematoda Nematoda 61.6 1.2e-8   NR CAD2179589.1 390850 g106094 i0 43.9 0.621818181818182 57 32 62.2 0 176 6 22 78 CAD2179589.1 unnamed protein product [Meloidogyne enterolobii] diamond 171 61.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne enterolobii
31747003 31747003 PRJNA1158727_P_NODE_163977_length_241_cov_0.916667_g156515_i0 PRJNA1158727 163977 241 0.916667 2.20916747 Halicephalobus sp. NKZ332 2598192 Nematoda Nematoda 60.5 2.1e-8   NR KAE9548233.1 2598192 g156515 i0 52.7 2.62655601659751 55 24 68.5 1 166 2 12 64 KAE9548233.1 hypothetical protein FO519_008555, partial [Halicephalobus sp. NKZ332] diamond 633 60.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Halicephalobus Halicephalobus sp. NKZ332
32190062 32190062 PRJNA1158727_P_NODE_120938_length_266_cov_1.595855_g113477_i0 PRJNA1158727 120938 266 1.595855 4.2449743 Pristionchus pacificus 54126 Nematoda Nematoda 43.1 0.0362   NR KAF8365425.1 54126 g113477 i0 42.9 0.552631578947368 49 26 53 1 181 41 396 444 KAF8365425.1 hypothetical protein PRIPAC_83254 [Pristionchus pacificus] diamond 147 43.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pacificus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;