RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1158727", tax_clade = "Metamonada" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 4 ✖

tax_clade 1

  • Metamonada · 4 ✖

bioproject 1

  • PRJNA1158727 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1578696 1578696 PRJNA1158727_P_NODE_146242_length_247_cov_0.885057_g138780_i0 PRJNA1158727 146242 247 0.885057 2.18609079 Trichomonadida 37104 Parabasalia other_Eukaryota 135 6.26e-35   NR BAA24068.1 43075 g138780 i0 81.7 9.01214574898785 82 14 98.4 1 245 3 24 105 BAA24068.1 elongation factor 2, partial [Trichomonas tenax] diamond 2226 136 0.992647058823529 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas tenax
24529431 24529431 PRJNA1158727_P_NODE_116880_length_271_cov_1.338384_g109419_i0 PRJNA1158727 116880 271 1.338384 3.62702064 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 158 2.0899999999999999e-47   NR XP_067778009.1 135588 g109419 i0 80.9 14.0147601476015 89 17 98.5 0 269 3 32 120 XP_067778009.1 peptidyl-prolyl cis-trans isomerase [Histomonas meleagridis] diamond 3798 158 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
26977001 26977001 PRJNA1158727_P_NODE_164222_length_241_cov_0.886905_g156760_i0 PRJNA1158727 164222 241 0.886905 2.13744105 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 48.5 3.35e-4   NR XP_068365799.1 1144522 g156760 i0 35.5 0.771784232365145 62 40 77.2 0 190 5 399 460 XP_068365799.1 uncharacterized protein TRFO_17495 [Tritrichomonas foetus] diamond 186 48.5 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
31019856 31019856 PRJNA1158727_P_NODE_125595_length_261_cov_1.414894_g118134_i0 PRJNA1158727 125595 261 1.414894 3.69287334 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 67.8 6.64e-11   NR XP_001298946.1 412133 g118134 i0 35.3 0.977011494252874 85 55 97.7 0 259 5 293 377 XP_001298946.1 8-oxo-dGTP phosphohydrolase protein [Trichomonas vaginalis G3] diamond 255 67.8 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;