RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1158727", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 4 ✖

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA1158727 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4865559 4865559 PRJNA1158727_P_NODE_144584_length_248_cov_0.880000_g137122_i0 PRJNA1158727 144584 248 0.88 2.1824 Cryptodifflugia 1078833 Tubulinea other_Eukaryota 453 5.2600000000000005e-123   NTclustered gi|345294024|gb|JF694280.1| 1078836 g137122 i0 99.597 90.2056451612903 248 1 100 0 1 248 1521 1768 Cryptodifflugia operculata small subunit ribosomal RNA gene, partial sequence blastn 22371 453 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
6140593 6140593 PRJNA1158727_P_NODE_79625_length_341_cov_0.787313_g72164_i0 PRJNA1158727 79625 341 0.787313 2.68473733 Vermamoeba 1260114 Tubulinea other_Eukaryota 586 7.14e-163   NTclustered gi|300078496|gb|GU001158.1| 5778 g72164 i0 97.654 75.950146627566 341 8 100 0 1 341 2270 2610 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 25899 586 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
15606005 15606005 PRJNA1158727_P_NODE_106673_length_283_cov_2.690476_g99212_i0 PRJNA1158727 106673 283 2.690476 7.61404708 Lesquereusia modesta 1260108 Tubulinea other_Eukaryota 140 5.22e-39   NR AFX73094.1 1260108 g99212 i0 73.4 0.996466431095406 94 25 99.6 0 282 1 152 245 AFX73094.1 elongation factor 2 alpha, partial [Lesquereusia modesta] diamond 282 140 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Lesquereusiidae Lesquereusia Lesquereusia modesta
18155975 18155975 PRJNA1158727_P_NODE_153175_length_244_cov_1.801170_g145713_i0 PRJNA1158727 153175 244 1.80117 4.3948548 Echinamoeba thermarum 197648 Tubulinea other_Eukaryota 331 2.5200000000000006e-86   NTclustered gi|27526824|emb|AJ489261.1| 197648 g145713 i0 91.429 98.7254098360656 245 15 98 5 1 240 432 189 Echinamoeba thermarum 18S rRNA gene, isolate OSB1, clone 5 blastn 24089 331 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida   Echinamoebidae Echinamoeba Echinamoeba thermarum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;