RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA1156092" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1156092 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2853664 2853664 PRJNA1156092_P_NODE_15343_length_297_cov_1.031250_g15213_i0 PRJNA1156092 15343 297 1.03125 3.0628125 uncultured Verrucomicrobiota bacterium 156588 Bacteria Bacteria 448 3.0099999999999998e-121   NTclustered gi|226525288|gb|FJ872373.1| 156588 g15213 i0 93.96 69.3771043771044 298 14 99 4 1 296 16357 16652 Uncultured Verrucomicrobia bacterium clone 118 genomic sequence blastn 20605 448 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         uncultured Verrucomicrobiota bacterium
21979753 21979753 PRJNA1156092_P_NODE_30678_length_243_cov_0.905882_g30548_i0 PRJNA1156092 30678 243 0.905882 2.20129326 Opitutus sp. GAS368 1882749 Bacteria Bacteria 73.1 1.68e-8   NTclustered gi|1085764882|emb|LT629735.1| 1882749 g30548 i0 82.418 30.8765432098765 91 9 38 6 26 116 2527548 2527465 Opitutus sp. GAS368 genome assembly, chromosome: I blastn 7503 73.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus sp. GAS368
26806512 26806512 PRJNA1156092_P_NODE_29661_length_244_cov_0.900585_g29531_i0 PRJNA1156092 29661 244 0.900585 2.1974274 Haloferula 574899 Bacteria Bacteria 112 1.15e-26   NR WP_200279376.1 490093 g29531 i0 62.5 1.9672131147541 80 30 98.4 0 242 3 591 670 WP_200279376.1 lamin tail domain-containing protein [Haloferula rosea] diamond 480 112 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Haloferula Haloferula rosea
27829998 27829998 PRJNA1156092_P_NODE_29584_length_244_cov_0.900585_g29454_i0 PRJNA1156092 29584 244 0.900585 2.1974274 Candidatus Methylacidiphilales bacterium 2720631 Bacteria Bacteria 102 4.529999999999999e-23   NR MDD5262713.1 2720631 g29454 i0 67.1 4.75819672131148 76 24 93.4 1 228 1 198 272 MDD5262713.1 FGGY-family carbohydrate kinase [Candidatus Methylacidiphilales bacterium] diamond 1161 102 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Methylacidiphilae Methylacidiphilales     Candidatus Methylacidiphilales bacterium
28998609 28998609 PRJNA1156092_P_NODE_29748_length_244_cov_0.900585_g29618_i0 PRJNA1156092 29748 244 0.900585 2.1974274 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 44.7 0.00777   NR MCD8481200.1 2026799 g29618 i0 30.7 0.922131147540984 75 50 91 2 242 21 98 171 MCD8481200.1 fibronectin type III domain-containing protein [Verrucomicrobiota bacterium] diamond 225 44.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29093149 29093149 PRJNA1156092_P_NODE_29148_length_244_cov_0.900585_g29018_i0 PRJNA1156092 29148 244 0.900585 2.1974274 Roseimicrobium sp. ORNL1 2711231 Bacteria Bacteria 44.3 0.0109   NR WP_165210747.1 2711231 g29018 i0 35.3 0.836065573770492 68 33 76.2 2 59 244 179 241 WP_165210747.1 ArnT family glycosyltransferase [Roseimicrobium sp. ORNL1] diamond 204 44.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Roseimicrobium Roseimicrobium sp. ORNL1
31430692 31430692 PRJNA1156092_P_NODE_32516_length_241_cov_0.916667_g32386_i0 PRJNA1156092 32516 241 0.916667 2.20916747 Verrucomicrobiales bacterium 2026801 Bacteria Bacteria 123 3.2e-33   NR HAV63979.1 2026801 g32386 i0 74.7 0.983402489626556 79 20 98.3 0 4 240 102 180 HAV63979.1 TetR/AcrR family transcriptional regulator [Verrucomicrobiales bacterium] diamond 237 123 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;