RNAquarium Metadata Server
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contig_metadata

18 rows where bioproject = "PRJNA1156092" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 18 ✖

tax_clade 1

bioproject 1

  • PRJNA1156092 · 18 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
303045 303045 PRJNA1156092_P_NODE_8821_length_369_cov_1.222973_g8691_i0 PRJNA1156092 8821 369 1.222973 4.51277037 Cochliopodium minus 313997 Discosea other_Eukaryota 353 8.58e-93   NTclustered gi|330902862|gb|JF298257.1| 313997 g8691 i0 95.946 6.55013550135501 222 2 60 6 2 222 219 4 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 2417 353 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
1577697 1577697 PRJNA1156092_P_NODE_9342_length_360_cov_1.811847_g9212_i0 PRJNA1156092 9342 360 1.811847 6.5226492 Cochliopodium minus 313997 Discosea other_Eukaryota 593 4.519999999999998e-165   NTclustered gi|330902862|gb|JF298257.1| 313997 g9212 i0 96.409 57.4361111111111 362 8 100 5 1 360 619 261 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 20677 593 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
5405858 5405858 PRJNA1156092_P_NODE_22105_length_251_cov_0.865169_g21975_i0 PRJNA1156092 22105 251 0.865169 2.17157419 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 57.4 7.28e-8   NR XP_004337227.1 1257118 g21975 i0 48.5 0.788844621513944 66 32 77.7 2 56 250 18 82 XP_004337227.1 1,2dihydroxy-3-keto-5-methylthiopentene dioxygenase [Acanthamoeba castellanii str. Neff] diamond 198 57.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
13056499 13056499 PRJNA1156092_P_NODE_25391_length_248_cov_0.880000_g25261_i0 PRJNA1156092 25391 248 0.88 2.1824 Cochliopodium larifeili 1017091 Discosea other_Eukaryota 375 1.1699999999999999e-99   NTclustered gi|330902858|gb|JF298255.1| 1017091 g25261 i0 94 12.4758064516129 250 11 100 4 1 248 685 932 Cochliopodium larifeili clone 904 18S ribosomal RNA gene, partial sequence blastn 3094 375 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium larifeili
16879903 16879903 PRJNA1156092_P_NODE_24154_length_249_cov_0.875000_g24024_i0 PRJNA1156092 24154 249 0.875 2.17875 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 150 3.68e-44   NR XP_004349728.1 1257118 g24024 i0 84.1 0.987951807228916 82 13 98.8 0 249 4 37 118 XP_004349728.1 Rho family, small GTP binding protein Rac3, putative [Acanthamoeba castellanii str. Neff] diamond 246 150 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27040338 27040338 PRJNA1156092_P_NODE_26162_length_247_cov_0.885057_g26032_i0 PRJNA1156092 26162 247 0.885057 2.18609079 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 75.1 7.32e-14   NR XP_004338074.1 1257118 g26032 i0 77.8 1.97975708502024 54 12 65.6 0 243 82 177 230 XP_004338074.1 TolAlike protein [Acanthamoeba castellanii str. Neff] diamond 489 75.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27704073 27704073 PRJNA1156092_P_NODE_28984_length_244_cov_0.900585_g28854_i0 PRJNA1156092 28984 244 0.900585 2.1974274 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 116 1.37e-29   NR XP_004333246.1 1257118 g28854 i0 70.3 0.909836065573771 74 22 91 0 21 242 12 85 XP_004333246.1 transcriptional regulator, sir2 family [Acanthamoeba castellanii str. Neff] diamond 222 116 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28114040 28114040 PRJNA1156092_P_NODE_26985_length_246_cov_0.890173_g26855_i0 PRJNA1156092 26985 246 0.890173 2.18982558 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 42.7 0.0405   NR XP_004340864.1 1257118 g26855 i0 35.9 0.951219512195122 78 39 87.8 2 28 243 962 1034 XP_004340864.1 isoform 2 of serologically defined colon cancer antigen 1 family protein [Acanthamoeba castellanii str. Neff] diamond 234 42.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28240295 28240295 PRJNA1156092_P_NODE_21166_length_255_cov_1.758242_g21036_i0 PRJNA1156092 21166 255 1.758242 4.4835171 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 50.4 8.27e-5   NR XP_004354057.1 1257118 g21036 i0 40 1.78823529411765 75 37 88.2 2 30 254 550 616 XP_004354057.1 amidohydrolase domain containing protein [Acanthamoeba castellanii str. Neff] diamond 456 50.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28808490 28808490 PRJNA1156092_P_NODE_21008_length_256_cov_1.683060_g20878_i0 PRJNA1156092 21008 256 1.68306 4.3086336 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 90.1 9.4e-19   NR XP_004347186.1 1257118 g20878 i0 54.8 1.9453125 84 35 98.4 2 4 255 97 177 XP_004347186.1 SH2 domain/protein kinase domain containing protein [Acanthamoeba castellanii str. Neff] diamond 498 90.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29629359 29629359 PRJNA1156092_P_NODE_18210_length_276_cov_1.133005_g18080_i0 PRJNA1156092 18210 276 1.133005 3.1270938 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 129 2.93e-33   NR XP_004333212.1 1257118 g18080 i0 68.9 0.978260869565217 90 27 97.8 1 274 5 49 137 XP_004333212.1 diacylglycerylN,N,N-trimethylhomoserine synthesis protein [Acanthamoeba castellanii str. Neff] diamond 270 129 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30293494 30293494 PRJNA1156092_P_NODE_24392_length_249_cov_0.875000_g24262_i0 PRJNA1156092 24392 249 0.875 2.17875 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 98.6 8.960000000000001e-22   NR XP_004353581.1 1257118 g24262 i0 58.5 0.987951807228916 82 32 98.8 1 247 2 505 584 XP_004353581.1 protein kinase domain containing protein [Acanthamoeba castellanii str. Neff] diamond 246 98.6 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31272634 31272634 PRJNA1156092_P_NODE_23055_length_250_cov_0.870056_g22925_i0 PRJNA1156092 23055 250 0.870056 2.17514 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 87 4.34e-18   NR XP_004334120.1 1257118 g22925 i0 59 0.996 83 30 99.6 3 2 250 158 236 XP_004334120.1 dihydrodipicolinate synthetase, putative [Acanthamoeba castellanii str. Neff] diamond 249 87 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31651967 31651967 PRJNA1156092_P_NODE_10377_length_345_cov_2.551471_g10247_i0 PRJNA1156092 10377 345 2.551471 8.80257495 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 154 2.2899999999999998e-43   NR XP_004335426.1 1257118 g10247 i0 61.1 0.982608695652174 113 44 98.3 0 341 3 193 305 XP_004335426.1 cathepsin L, putative [Acanthamoeba castellanii str. Neff] diamond 339 154 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31968408 31968408 PRJNA1156092_P_NODE_27598_length_246_cov_0.890173_g27468_i0 PRJNA1156092 27598 246 0.890173 2.18982558 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 140 2.24e-39   NR XP_004340119.1 1257118 g27468 i0 75.6 1 82 20 100 0 246 1 113 194 XP_004340119.1 NEDD8conjugating enzyme Ubc12, putative [Acanthamoeba castellanii str. Neff] diamond 246 140 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32443399 32443399 PRJNA1156092_P_NODE_29039_length_244_cov_0.900585_g28909_i0 PRJNA1156092 29039 244 0.900585 2.1974274 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 52.8 7.6e-6   NR XP_004345996.1 1257118 g28909 i0 43.8 0.786885245901639 64 36 78.7 0 47 238 8 71 XP_004345996.1 ProteinS-isoprenylcysteine O-methyltransferase [Acanthamoeba castellanii str. Neff] diamond 192 52.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32538245 32538245 PRJNA1156092_P_NODE_31159_length_242_cov_0.911243_g31029_i0 PRJNA1156092 31159 242 0.911243 2.20520806 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 87 8.47e-18   NR XP_004347144.1 1257118 g31029 i0 71.9 0.706611570247934 57 16 70.7 0 70 240 7 63 XP_004347144.1 eukaryotic translation initiation factor 2, putative [Acanthamoeba castellanii str. Neff] diamond 171 87 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32853003 32853003 PRJNA1156092_P_NODE_29720_length_244_cov_0.900585_g29590_i0 PRJNA1156092 29720 244 0.900585 2.1974274 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 45.1 0.00583   NR XP_004353173.1 1257118 g29590 i0 33.3 0.922131147540984 75 47 92.2 1 244 20 77 148 XP_004353173.1 uncharacterized protein ACA1_072780 [Acanthamoeba castellanii str. Neff] diamond 225 45.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;