RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA1156092" and tax_kingdom = "Pararnavirae"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 4 ✖

bioproject 1

  • PRJNA1156092 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15605761 15605761 PRJNA1156092_P_NODE_33_length_2639_cov_3.084178_g25_i0 PRJNA1156092 33 2639 3.084178 81.39145742 Caulimovirus maculatractylodei 3047382 Viruses Viruses 1011 0   NTclustered gi|2592177517|gb|OR544810.1| 1711685 g25 i0 82.108 3.88783630162941 1224 180 45 21 431 1619 2003 784 Atractylodes mild mottle virus isolate AVLC reverse transcriptase gene, complete cds blastn 10260 1011 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Caulimovirus Caulimovirus maculatractylodei
23255227 23255227 PRJNA1156092_P_NODE_4399_length_489_cov_1.564904_g4270_i0 PRJNA1156092 4399 489 1.564904 7.65238056 Murine leukemia-related retroviruses 99182 Viruses Viruses 878 0   NTclustered gi|336087897|emb|FR872816.1| 438045 g4270 i0 99.179 112.419222903885 487 4 99 0 1 487 8015 8501 XMRV complete proviral genome, isolate S-162 blastn 54973 878 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Murine leukemia-related retroviruses
27324841 27324841 PRJNA1156092_P_NODE_663_length_1077_cov_2.892430_g584_i0 PRJNA1156092 663 1077 2.89243 31.1514711 Atractylodes mild mottle virus 1711685 Viruses Viruses 133 9.12e-31   NR YP_009165749.1 1711685 g584 i0 63.7 0.504178272980501 91 33 25.3 0 803 1075 276 366 YP_009165749.1 ORF4 [Atractylodes mild mottle virus] diamond 543 133 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Caulimovirus Caulimovirus maculatractylodei
29914123 29914123 PRJNA1156092_P_NODE_29111_length_244_cov_0.900585_g28981_i0 PRJNA1156092 29111 244 0.900585 2.1974274 Retroviridae sp. 2681591 Viruses Viruses 77 3.22e-14   NR XNT20490.1 2681591 g28981 i0 49.4 0.971311475409836 79 34 89.8 2 17 235 450 528 XNT20490.1 MAG: hypothetical protein, partial [Retroviridae sp.] diamond 237 77 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Retroviridae sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;