RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1156092", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 4 ✖

tax_kingdom 1

  • Metazoa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1156092 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10506496 10506496 PRJNA1156092_P_NODE_16749_length_286_cov_1.375587_g16619_i0 PRJNA1156092 16749 286 1.375587 3.93417882 Strongyloides ratti 34506 Nematoda Nematoda 196 1.15e-45   NTclustered gi|1376145711|ref|XM_024653389.1| 34506 g16619 i0 84.422 7.51748251748252 199 31 70 0 37 235 684 486 Strongyloides ratti 5'-AMP-activated protein kinase catalytic subunit alpha-1 (SRAE_2000233100), partial mRNA blastn 2150 196 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
18154606 18154606 PRJNA1156092_P_NODE_25095_length_248_cov_0.880000_g24965_i0 PRJNA1156092 25095 248 0.88 2.1824 Soboliphyme baturini 241478 Nematoda Nematoda 60.1 1.07e-8   NR VDP07580.1 241478 g24965 i0 63.6 2.03225806451613 44 16 53.2 0 133 2 67 110 VDP07580.1 unnamed protein product [Soboliphyme baturini] diamond 504 60.1 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dioctophymatida Soboliphymatidae Soboliphyme Soboliphyme baturini
28114034 28114034 PRJNA1156092_P_NODE_19625_length_266_cov_1.238342_g19495_i0 PRJNA1156092 19625 266 1.238342 3.29398972 Mesorhabditis belari 2138241 Nematoda Nematoda 82.4 4.94e-16   NR CAJ0946436.1 2138241 g19495 i0 52.2 2.33458646616541 69 32 77.8 1 266 60 402 469 CAJ0946436.1 unnamed protein product, partial [Mesorhabditis belari] diamond 621 82.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis belari
32474940 32474940 PRJNA1156092_P_NODE_21519_length_253_cov_1.283333_g21389_i0 PRJNA1156092 21519 253 1.283333 3.24683249 Ancylostoma ceylanicum 53326 Nematoda Nematoda 114 4.15e-30   NR EYC09444.1 53326 g21389 i0 63.1 2.98814229249012 84 31 99.6 0 1 252 69 152 EYC09444.1 hypothetical protein Y032_0060g3122 [Ancylostoma ceylanicum] diamond 756 114 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Ancylostoma Ancylostoma ceylanicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;