RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA1156092" and tax_clade = "core chlorophytes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 9 ✖

bioproject 1

  • PRJNA1156092 · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18154553 18154553 PRJNA1156092_P_NODE_21995_length_251_cov_0.865169_g21865_i0 PRJNA1156092 21995 251 0.865169 2.17157419 Coccomyxa subellipsoidea 248742 Plants Plants 289 1.59e-73   NTclustered gi|545367524|ref|XM_005648521.1| 574566 g21865 i0 87.549 11.597609561753 257 23 100 7 1 251 551 298 Coccomyxa subellipsoidea C-169 chloroplast ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit mRNA blastn 2911 289 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
24528961 24528961 PRJNA1156092_P_NODE_500_length_1201_cov_2.898050_g431_i0 PRJNA1156092 500 1201 2.89805 34.8055805 Scherffelia dubia 3190 Plants Plants 75 2.62e-8   NTclustered gi|1783497212|ref|NC_045363.1| 3190 g431 i0 77.536 4.5661948376353 138 21 11 9 603 732 31508 31373 Scherffelia dubia culture SAG:17.86 mitochondrion, complete genome blastn 5484 75 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorodendrophyceae Chlorodendrales Chlorodendraceae Scherffelia Scherffelia dubia
27565028 27565028 PRJNA1156092_P_NODE_12184_length_326_cov_0.909091_g12054_i0 PRJNA1156092 12184 326 0.909091 2.96363666 Chlorophyta 3041 Plants Plants 79.7 1.04e-14   NR KAK9916564.1 248742 g12054 i0 52.1 2.99079754601227 71 34 65.3 0 105 317 655 725 KAK9916564.1 hypothetical protein WJX75_004254 [Coccomyxa subellipsoidea] diamond 975 79.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
27798666 27798666 PRJNA1156092_P_NODE_29564_length_244_cov_0.900585_g29434_i0 PRJNA1156092 29564 244 0.900585 2.1974274 Coccomyxa sp. Obi 2315456 Plants Plants 72.4 1.48e-13   NR BDA45404.1 2315456 g29434 i0 94.4 0.442622950819672 36 2 44.3 0 2 109 16 51 BDA45404.1 hypothetical protein COCOBI_07-1910 [Coccomyxa sp. Obi] diamond 108 72.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa sp. Obi
29882571 29882571 PRJNA1156092_P_NODE_20051_length_263_cov_1.368421_g19921_i0 PRJNA1156092 20051 263 1.368421 3.59894723 Chlamydomonas eustigma 1157962 Plants Plants 74.3 3.49e-13   NR GAX85640.1 1157962 g19921 i0 63.2 0.650190114068441 57 21 65 0 172 2 236 292 GAX85640.1 hypothetical protein CEUSTIGMA_g13055.t1 [Chlamydomonas eustigma] diamond 171 74.3 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas eustigma
30281306 30281306 PRJNA1156092_P_NODE_29212_length_244_cov_0.900585_g29082_i0 PRJNA1156092 29212 244 0.900585 2.1974274 Eukaryota 2759 Plants Plants 90.9 8.91e-20   NR WIA16162.1 3088 g29082 i0 66.7 4.47540983606557 72 23 88.5 1 218 3 1 71 WIA16162.1 hypothetical protein OEZ85_012877 [Tetradesmus obliquus] diamond 1092 90.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus obliquus
31196742 31196742 PRJNA1156092_P_NODE_11355_length_334_cov_1.475096_g11225_i0 PRJNA1156092 11355 334 1.475096 4.92682064 root 1 Root_unresolved Root_unresolved 150 1.62e-43   NR CAD7699412.1 121088 g11225 i0 66.1 2.88323353293413 109 37 97.9 0 6 332 1 109 CAD7699412.1 unnamed protein product [Ostreobium quekettii] diamond 963 150 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Ostreobiaceae Ostreobium Ostreobium quekettii
31715421 31715421 PRJNA1156092_P_NODE_26077_length_247_cov_0.885057_g25947_i0 PRJNA1156092 26077 247 0.885057 2.18609079 Coccomyxa viridis 1274662 Plants Plants 51.2 2.99e-5   NR CAL5223732.1 1274662 g25947 i0 37.5 0.97165991902834 80 50 97.2 0 245 6 82 161 CAL5223732.1 g6292 [Coccomyxa viridis] diamond 240 51.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa viridis
32221647 32221647 PRJNA1156092_P_NODE_28778_length_245_cov_0.866279_g28648_i0 PRJNA1156092 28778 245 0.866279 2.12238355 Monoraphidium minutum 39955 Plants Plants 76.3 5.95e-14   NR KAI8462587.1 39955 g28648 i0 49.4 0.991836734693878 81 39 99.2 2 243 1 179 257 KAI8462587.1 MAG: phosphoglucomutase [Monoraphidium minutum] diamond 243 76.3 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium minutum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;