RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1156092", tax_clade = "PVC group" and tax_phylum = "Kiritimatiellota"

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tax_superkingdom 1

tax_phylum 1

  • Kiritimatiellota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA1156092 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12515906 12515906 PRJNA1156092_P_NODE_17150_length_283_cov_1.466667_g17020_i0 PRJNA1156092 17150 283 1.466667 4.15066761 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 134 4.15e-36   NR MFT5116628.1 2212473 g17020 i0 93.6 0.826855123674912 78 5 82.7 0 50 283 22 99 MFT5116628.1 elongation factor Ts [Kiritimatiellia bacterium] diamond 234 134 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium
27818014 27818014 PRJNA1156092_P_NODE_26644_length_247_cov_0.885057_g26514_i0 PRJNA1156092 26644 247 0.885057 2.18609079 Pseudomonadati 3379134 Bacteria Bacteria 53.9 4.29e-6   NR AKJ64754.1 1307763 g26514 i0 56.9 3.10931174089069 58 21 68 2 3 170 362 417 AKJ64754.1 putative extracellular repeat protein, HAF family [Kiritimatiella glycovorans] diamond 768 53.9 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia Kiritimatiellales Kiritimatiellaceae Kiritimatiella Kiritimatiella glycovorans
30451289 30451289 PRJNA1156092_P_NODE_23313_length_250_cov_0.870056_g23183_i0 PRJNA1156092 23313 250 0.870056 2.17514 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 122 3.4499999999999996e-30   NR MFT5118857.1 2212473 g23183 i0 89.2 0.78 65 7 78 0 56 250 1 65 MFT5118857.1 exoribonuclease-2 [Kiritimatiellia bacterium] diamond 195 122 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;