RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1156092", tax_clade = "Metamonada" and tax_phylum = "Fornicata"

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tax_superkingdom 1

tax_phylum 1

  • Fornicata · 2 ✖

tax_clade 1

  • Metamonada · 2 ✖

bioproject 1

  • PRJNA1156092 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26787226 26787226 PRJNA1156092_P_NODE_19761_length_265_cov_1.442708_g19631_i0 PRJNA1156092 19761 265 1.442708 3.8231762 Giardia intestinalis 5741 Fornicata other_Eukaryota 51.2 5.08e-5   NR ESU40720.1 5741 g19631 i0 37.7 0.871698113207547 77 38 80.4 4 5 217 230 302 ESU40720.1 Variant-specific surface protein [Giardia intestinalis] diamond 231 51.2 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis
31683598 31683598 PRJNA1156092_P_NODE_14157_length_307_cov_1.606838_g14027_i0 PRJNA1156092 14157 307 1.606838 4.93299266 Giardia intestinalis 5741 Fornicata other_Eukaryota 53.5 1.28e-5   NR ESU41343.1 5741 g14027 i0 32 2.96091205211726 103 57 96.7 3 7 303 411 504 ESU41343.1 Variant-specific surface protein [Giardia intestinalis] diamond 909 53.5 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;