RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1151638" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1151638 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1576522 1576522 PRJNA1151638_P_NODE_1642_length_364_cov_3.673540_g1575_i0 PRJNA1151638 1642 364 3.67354 13.3716856 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 433 1.06e-116   NTclustered gi|76574291|gb|DQ139439.1| 171953 g1575 i0 88.251 75.2005494505494 366 38 100 5 1 364 1167 1529 Uncultured Acidobacteria bacterium clone CAL9 23S ribosomal RNA gene, partial sequence blastn 27373 433 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
5405057 5405057 PRJNA1151638_P_NODE_4505_length_257_cov_1.543478_g4438_i0 PRJNA1151638 4505 257 1.543478 3.96673846 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 435 1.99e-117   NTclustered gi|76574295|gb|DQ139443.1| 171953 g4438 i0 97.638 101.992217898833 254 5 99 1 1 254 693 945 Uncultured Acidobacteria bacterium clone CAL2 23S ribosomal RNA gene, partial sequence blastn 26212 435 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
18153636 18153636 PRJNA1151638_P_NODE_1955_length_341_cov_2.365672_g1888_i0 PRJNA1151638 1955 341 2.365672 8.06694152 Acidobacteriota bacterium 1978231 Bacteria Bacteria 342 1.7099999999999994e-89   NTclustered gi|1958093598|gb|CP065003.1| 1978231 g1888 i0 88.194 104.395894428152 288 33 84 1 1 287 317262 317549 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.185_cln chromosome, complete genome blastn 35599 342 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
21978736 21978736 PRJNA1151638_P_NODE_1838_length_349_cov_1.695652_g1771_i0 PRJNA1151638 1838 349 1.695652 5.91782548 Holophaga sp. oral clone CA002 163522 Bacteria Bacteria 601 2.6099999999999998e-167   NTclustered gi|14537946|gb|AF385537.1| 163522 g1771 i0 97.708 100.275071633238 349 8 100 0 1 349 332 680 Holophaga sp. oral clone CA002 16S ribosomal RNA gene, partial sequence blastn 34996 601 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Holophagales Holophagaceae Holophaga Holophaga sp. oral clone CA002

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;