RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1151638" and tax_clade = "Sar"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_clade 1

bioproject 1

  • PRJNA1151638 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7954979 7954979 PRJNA1151638_P_NODE_1447_length_382_cov_2.158576_g1380_i0 PRJNA1151638 1447 382 2.158576 8.24576032 Plasmodium gallinaceum 5849 SAR_Eukaryotes SAR_Eukaryotes 69.4 3.62e-7   NTclustered gi|1620123999|ref|XM_028672817.1| 5849 g1380 i0 100 1.92146596858639 37 0 10 0 346 382 4039 4003 Plasmodium gallinaceum merozoite adhesive erythrocytic binding protein (MAEBL), partial mRNA blastn 734 69.4 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium gallinaceum
18153655 18153655 PRJNA1151638_P_NODE_2575_length_310_cov_2.890295_g2508_i0 PRJNA1151638 2575 310 2.890295 8.9599145 Chlorospumella boenigkii 2976940 SAR_Eukaryotes SAR_Eukaryotes 433 8.85e-117   NTclustered gi|2295553598|gb|OP378947.1| 2976940 g2508 i0 91.935 96.6677419354839 310 23 100 2 1 310 1310 1617 Chrysophyceae sp. FNitsche-2022b isolate 1534 large subunit ribosomal RNA gene, partial sequence blastn 29967 433 1 Eukaryota Sar     Chrysophyceae     Chlorospumella Chlorospumella boenigkii
30830160 30830160 PRJNA1151638_P_NODE_1874_length_347_cov_1.138686_g1807_i0 PRJNA1151638 1874 347 1.138686 3.95124042 Plasmodium relictum 85471 SAR_Eukaryotes SAR_Eukaryotes 44.3 0.037   NR XP_028532125.1 85471 g1807 i0 35.2 0.907780979827089 105 57 83.9 4 36 326 15 116 XP_028532125.1 conserved Plasmodium protein, unknown function [Plasmodium relictum] diamond 315 44.3 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium relictum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;