RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1150539" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1150539 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28524767 28524767 PRJNA1150539_S_NODE_85187_length_259_cov_2.623656_g84591_i0 PRJNA1150539 85187 259 2.623656 6.79526904 Phytophthora aleatoria 2496075 SAR_Eukaryotes SAR_Eukaryotes 42.7 0.0465   NR KAG6959184.1 2496075 g84591 i0 31.3 0.776061776061776 67 45 76.4 1 219 22 261 327 KAG6959184.1 hypothetical protein JG688_00010186 [Phytophthora aleatoria] diamond 201 42.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora aleatoria
29093127 29093127 PRJNA1150539_S_NODE_52328_length_307_cov_2.230769_g51732_i0 PRJNA1150539 52328 307 2.230769 6.84846083 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 43.9 0.0318   NR XP_008875674.1 157072 g51732 i0 35 0.586319218241042 60 39 58.6 0 282 103 574 633 XP_008875674.1 hypothetical protein, variant [Aphanomyces invadans] diamond 180 43.9 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;