RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1150539", tax_phylum = "Nitrososphaerota" and tax_superkingdom = "Archaea"

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analysis 2

tax_superkingdom 1

  • Archaea · 2 ✖

tax_phylum 1

  • Nitrososphaerota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1150539 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7954924 7954924 PRJNA1150539_S_NODE_96227_length_247_cov_1.517241_g95631_i0 PRJNA1150539 96227 247 1.517241 3.74758527 Candidatus Nitrososphaera gargensis 497727 Archaea Archaea 52.8 0.022   NTclustered gi|408363220|gb|CP002408.1| 1237085 g95631 i0 100 0.11336032388664 28 0 11 0 136 163 887864 887837 Candidatus Nitrososphaera gargensis Ga9.2, complete genome blastn 28 52.8 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Nitrososphaera Candidatus Nitrososphaera gargensis
27956343 27956343 PRJNA1150539_S_NODE_19825_length_383_cov_2.738710_g19229_i0 PRJNA1150539 19825 383 2.73871 10.4892593 Nitrososphaeraceae archaeon 2169593 Archaea Archaea 223 3.94e-73   NR HZC48256.1 2169593 g19229 i0 95.8 2.92167101827676 118 3 90.9 1 6 353 5 122 HZC48256.1 hypothetical protein [Nitrososphaeraceae archaeon] diamond 1119 223 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae   Nitrososphaeraceae archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;