RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA1150539" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA1150539 · 5 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1036829 1036829 PRJNA1150539_S_NODE_56661_length_300_cov_1.017621_g56065_i0 PRJNA1150539 56661 300 1.017621 3.052863 Naegleria 5761 Heterolobosea other_Eukaryota 555 1.7399999999999995e-153   NTclustered gi|2618963742|gb|OR769034.1| 5762 g56065 i0 100 25.37 300 0 100 0 1 300 3906 4205 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 7611 555 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
1575839 1575839 PRJNA1150539_S_NODE_36202_length_338_cov_1.694340_g35606_i0 PRJNA1150539 36202 338 1.69434 5.7268692 Naegleria clarki 36333 Heterolobosea other_Eukaryota 553 7.179999999999998e-153   NTclustered gi|2651357780|gb|PP174296.1| 36333 g35606 i0 99.026 39.9230769230769 308 3 91 0 1 308 3955 3648 Naegleria clarki isolate P2881 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 13494 553 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria clarki
6139615 6139615 PRJNA1150539_S_NODE_58945_length_296_cov_2.026906_g58349_i0 PRJNA1150539 58945 296 2.026906 5.99964176 Naegleria 5761 Heterolobosea other_Eukaryota 547 2.8799999999999986e-151   NTclustered gi|2651357780|gb|PP174296.1| 36333 g58349 i0 100 51.1824324324324 296 0 100 0 1 296 2206 1911 Naegleria clarki isolate P2881 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 15150 547 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria clarki
15064607 15064607 PRJNA1150539_S_NODE_96192_length_247_cov_1.637931_g95596_i0 PRJNA1150539 96192 247 1.637931 4.04568957 Naegleria 5761 Heterolobosea other_Eukaryota 435 1.9e-117   NTclustered gi|2618963742|gb|OR769034.1| 5762 g95596 i0 99.58 676.210526315789 238 1 96 0 1 238 5042 5279 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 167024 435 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
22713605 22713605 PRJNA1150539_S_NODE_28258_length_357_cov_2.433099_g27662_i0 PRJNA1150539 28258 357 2.433099 8.68616343 Naegleria 5761 Heterolobosea other_Eukaryota 623 5.709999999999999e-174   NTclustered gi|165968557|gb|EU377597.1| 36333 g27662 i0 100 94.4005602240896 337 0 94 0 1 337 507 171 Naegleria clarki strain CRIB43 18S ribosomal RNA gene, partial sequence blastn 33701 623 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria clarki

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;