RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1150539" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1150539 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27040322 27040322 PRJNA1150539_S_NODE_87462_length_256_cov_3.967213_g86866_i0 PRJNA1150539 87462 256 3.967213 10.15606528 Armatimonadota bacterium 2033014 Bacteria Bacteria 43.9 0.0114   NR MCA1946964.1 2033014 g86866 i0 38.2 2.578125 89 46 93.8 2 242 3 4 92 MCA1946964.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB [Armatimonadota bacterium] diamond 660 43.9 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
30703710 30703710 PRJNA1150539_S_NODE_112774_length_206_cov_4.511278_g112178_i0 PRJNA1150539 112774 206 4.511278 9.29323268 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 45.4 0.00154   NR MBW7928387.1 2682144 g112178 i0 40 0.946601941747573 65 36 94.7 1 206 12 61 122 MBW7928387.1 hypothetical protein [Fimbriimonadaceae bacterium] diamond 195 45.4 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium
32632355 32632355 PRJNA1150539_S_NODE_18880_length_386_cov_5.290735_g18284_i0 PRJNA1150539 18880 386 5.290735 20.4222371 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 43.5 0.028   NR MCC6404102.1 2682144 g18284 i0 34.6 0.629533678756477 81 47 58.3 1 14 238 2 82 MCC6404102.1 DUF423 domain-containing protein [Fimbriimonadaceae bacterium] diamond 243 43.5 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;