RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

24 rows where bioproject = "PRJNA1150539", tax_phylum = "Acidobacteriota" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Bacteria · 24 ✖

tax_phylum 1

  • Acidobacteriota · 24 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1150539 · 24 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4128632 4128632 PRJNA1150539_S_NODE_82644_length_262_cov_3.507937_g82048_i0 PRJNA1150539 82644 262 3.507937 9.19079494 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 326 1.2799999999999999e-84   NTclustered gi|2621707050|emb|OY764903.1| 2212468 g82048 i0 89.057 107.977099236641 265 25 99 3 1 261 3557904 3558168 MAG: Bryobacteraceae bacterium isolate d7944118-f527-4ba8-a886-cdd3ae4bc3f8 genome assembly, chromosome: 1 blastn 28290 326 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
11780409 11780409 PRJNA1150539_S_NODE_92110_length_251_cov_1.646067_g91514_i0 PRJNA1150539 92110 251 1.646067 4.13162817 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 54.7 0.006   NTclustered gi|2874253836|emb|OY969886.1| 171953 g91514 i0 96.875 0.127490039840637 32 1 13 0 216 247 2338574 2338543 MAG: uncultured Acidobacteriota bacterium isolate MFD10007.bin.c.1 genome assembly, chromosome: 1 blastn 32 54.7 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
26628700 26628700 PRJNA1150539_S_NODE_58261_length_297_cov_2.214286_g57665_i0 PRJNA1150539 58261 297 2.214286 6.57642942 Acidobacteriota bacterium 1978231 Bacteria Bacteria 44.7 0.0139   NR MBK9064932.1 1978231 g57665 i0 39.3 1.6969696969697 84 36 84.8 2 20 271 15 83 MBK9064932.1 FAD-dependent oxidoreductase [Acidobacteriota bacterium] diamond 504 44.7 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
26647972 26647972 PRJNA1150539_S_NODE_59261_length_295_cov_4.585586_g58665_i0 PRJNA1150539 59261 295 4.585586 13.5274787 Bacteria 2 Bacteria Bacteria 47.4 0.00146   NR HOQ47985.1 2212468 g58665 i0 44.6 1.32203389830508 65 29 63.1 2 281 96 76 136 HOQ47985.1 hypothetical protein [Bryobacteraceae bacterium] diamond 390 47.4 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
27008465 27008465 PRJNA1150539_S_NODE_91942_length_251_cov_2.044944_g91346_i0 PRJNA1150539 91942 251 2.044944 5.13280944 Candidatus Acidiferrum sp. 3069120 Bacteria Bacteria 44.7 0.00871   NR HLZ50741.1 3069120 g91346 i0 37.5 0.860557768924303 72 34 80.1 3 16 216 12 77 HLZ50741.1 DNA internalization-related competence protein ComEC/Rec2 [Candidatus Acidiferrum sp.] diamond 216 44.7 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Candidatus Acidiferrales   Candidatus Acidiferrum Candidatus Acidiferrum sp.
27071847 27071847 PRJNA1150539_S_NODE_83222_length_262_cov_0.862434_g82626_i0 PRJNA1150539 83222 262 0.862434 2.25957708 Terriglobales bacterium 2282142 Bacteria Bacteria 42.7 0.0475   NR MFL6299362.1 2282142 g82626 i0 40.3 0.824427480916031 72 37 81.3 4 23 235 241 307 MFL6299362.1 chloride channel protein [Terriglobales bacterium] diamond 216 42.7 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales     Terriglobales bacterium
27735578 27735578 PRJNA1150539_S_NODE_96304_length_247_cov_1.327586_g95708_i0 PRJNA1150539 96304 247 1.327586 3.27913742 Acidobacteriota bacterium 1978231 Bacteria Bacteria 45.8 0.00313   NR HUU47070.1 1978231 g95708 i0 38 0.607287449392713 50 30 60.7 1 87 236 543 591 HUU47070.1 glycosyltransferase family 39 protein [Acidobacteriota bacterium] diamond 150 45.8 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
28619536 28619536 PRJNA1150539_S_NODE_71707_length_277_cov_2.250000_g71111_i0 PRJNA1150539 71707 277 2.25 6.2325 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 43.1 0.0209   NR HSK75308.1 2651171 g71111 i0 50 0.541516245487365 50 25 54.2 0 253 104 50 99 HSK75308.1 hypothetical protein [Thermoanaerobaculia bacterium] diamond 150 43.1 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
28777126 28777126 PRJNA1150539_S_NODE_64647_length_287_cov_2.878505_g64051_i0 PRJNA1150539 64647 287 2.878505 8.26130935 Terriglobia bacterium 2081523 Bacteria Bacteria 43.5 0.0339   NR MFQ5663260.1 2081523 g64051 i0 38 0.742160278745645 71 37 70 3 14 214 341 408 MFQ5663260.1 LPS export ABC transporter permease LptF [Terriglobia bacterium] diamond 213 43.5 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia       Terriglobia bacterium
29061540 29061540 PRJNA1150539_S_NODE_74388_length_273_cov_2.920000_g73792_i0 PRJNA1150539 74388 273 2.92 7.9716 Acidobacteriota bacterium 1978231 Bacteria Bacteria 43.1 0.0314   NR MBX3299453.1 1978231 g73792 i0 34.3 0.769230769230769 70 39 76.9 1 3 212 146 208 MBX3299453.1 hemolysin III family protein [Acidobacteriota bacterium] diamond 210 43.1 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
29093133 29093133 PRJNA1150539_S_NODE_86908_length_257_cov_2.130435_g86312_i0 PRJNA1150539 86908 257 2.130435 5.47521795 Edaphobacter sp. 1934404 Bacteria Bacteria 42.7 0.0446   NR HTF69929.1 1934404 g86312 i0 40 0.642023346303502 55 33 64.2 0 11 175 549 603 HTF69929.1 polysaccharide biosynthesis tyrosine autokinase [Edaphobacter sp.] diamond 165 42.7 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Edaphobacter Edaphobacter sp.
29282213 29282213 PRJNA1150539_S_NODE_16049_length_398_cov_6.572308_g15454_i0 PRJNA1150539 16049 398 6.572308 26.15778584 Blastocatellia bacterium 2052146 Bacteria Bacteria 165 2.17e-50   NR HEX4951128.1 2052146 g15454 i0 94 0.633165829145729 84 5 63.3 0 344 93 1 84 HEX4951128.1 type II toxin-antitoxin system MqsA family antitoxin [Blastocatellia bacterium] diamond 252 165 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia       Blastocatellia bacterium
29692533 29692533 PRJNA1150539_S_NODE_60790_length_293_cov_2.768182_g60194_i0 PRJNA1150539 60790 293 2.768182 8.11077326 Candidatus Acidiferrales bacterium 2952895 Bacteria Bacteria 45.8 0.00516   NR MFB3140414.1 2952895 g60194 i0 41.5 0.665529010238908 65 35 66.6 1 38 232 158 219 MFB3140414.1 PDZ domain-containing protein [Candidatus Acidiferrales bacterium] diamond 195 45.8 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Candidatus Acidiferrales     Candidatus Acidiferrales bacterium
29724137 29724137 PRJNA1150539_S_NODE_10410_length_435_cov_5.138122_g9815_i0 PRJNA1150539 10410 435 5.138122 22.3508307 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 45.4 0.0263   NR HZM58924.1 2910147 g9815 i0 39.7 0.468965517241379 68 39 46.2 2 349 149 108 174 HZM58924.1 heparan-alpha-glucosaminide N-acetyltransferase domain-containing protein [Vicinamibacterales bacterium] diamond 204 45.4 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium
29850852 29850852 PRJNA1150539_S_NODE_106411_length_233_cov_3.875000_g105815_i0 PRJNA1150539 106411 233 3.875 9.02875 Blastocatellia bacterium 2052146 Bacteria Bacteria 45.1 0.00499   NR HKC84589.1 2052146 g105815 i0 47.5 1.57081545064378 61 31 77.3 1 218 39 337 397 HKC84589.1 hypothetical protein [Blastocatellia bacterium] diamond 366 45.1 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia       Blastocatellia bacterium
29977049 29977049 PRJNA1150539_S_NODE_109931_length_225_cov_4.736842_g109335_i0 PRJNA1150539 109931 225 4.736842 10.6578945 Acidobacteriaceae bacterium 2052142 Bacteria Bacteria 42.4 0.0246   NR HEX6496486.1 2052142 g109335 i0 43.6 0.733333333333333 55 19 57.3 2 25 153 103 157 HEX6496486.1 cytochrome c-type biogenesis protein CcmH [Acidobacteriaceae bacterium] diamond 165 42.4 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae   Acidobacteriaceae bacterium
30356772 30356772 PRJNA1150539_S_NODE_71992_length_277_cov_1.122549_g71396_i0 PRJNA1150539 71992 277 1.122549 3.10946073 Candidatus Acidiferrum sp. 3069120 Bacteria Bacteria 42.4 0.045   NR HLZ11862.1 3069120 g71396 i0 32.9 0.790613718411552 73 41 70.4 2 24 218 26 98 HLZ11862.1 DinB family protein [Candidatus Acidiferrum sp.] diamond 219 42.4 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Candidatus Acidiferrales   Candidatus Acidiferrum Candidatus Acidiferrum sp.
30356778 30356778 PRJNA1150539_S_NODE_98292_length_245_cov_1.505814_g97696_i0 PRJNA1150539 98292 245 1.505814 3.6892443 Candidatus Solibacter sp. 2068625 Bacteria Bacteria 43.1 0.0138   NR MCX6632675.1 2068625 g97696 i0 26.9 0.955102040816327 78 54 91.8 1 243 19 6 83 MCX6632675.1 hypothetical protein [Candidatus Solibacter sp.] diamond 234 43.1 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Solibacteraceae Candidatus Solibacter Candidatus Solibacter sp.
30577170 30577170 PRJNA1150539_S_NODE_92933_length_250_cov_2.056497_g92337_i0 PRJNA1150539 92933 250 2.056497 5.1412425 Acidobacteriota bacterium 1978231 Bacteria Bacteria 44.3 0.0108   NR MBM3765365.1 1978231 g92337 i0 37.1 0.84 70 40 84 1 41 250 143 208 MBM3765365.1 hypothetical protein [Acidobacteriota bacterium] diamond 210 44.3 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
30596675 30596675 PRJNA1150539_S_NODE_65693_length_286_cov_1.084507_g65097_i0 PRJNA1150539 65693 286 1.084507 3.10169002 Pseudomonadati 3379134 Bacteria Bacteria 46.2 0.00371   NR MBI1748781.1 1978231 g65097 i0 30.3 1.42657342657343 76 51 77.6 1 49 270 163 238 MBI1748781.1 lipopolysaccharide biosynthesis protein [Acidobacteriota bacterium] diamond 408 46.2 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
30640460 30640460 PRJNA1150539_S_NODE_102473_length_241_cov_2.017857_g101877_i0 PRJNA1150539 102473 241 2.017857 4.86303537 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 43.9 0.0142   NR HME07450.1 2212468 g101877 i0 35.7 0.697095435684647 56 36 69.7 0 177 10 61 116 HME07450.1 hypothetical protein [Bryobacteraceae bacterium] diamond 168 43.9 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
31683591 31683591 PRJNA1150539_S_NODE_82977_length_262_cov_1.629630_g82381_i0 PRJNA1150539 82977 262 1.62963 4.2696306 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 57.8 2.28e-7   NR HEY7501598.1 2910147 g82381 i0 86.7 0.343511450381679 30 4 34.4 0 162 251 63 92 HEY7501598.1 IlvD/Edd family dehydratase [Vicinamibacterales bacterium] diamond 90 57.8 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium
32000113 32000113 PRJNA1150539_S_NODE_111718_length_213_cov_4.071429_g111122_i0 PRJNA1150539 111718 213 4.071429 8.67214377 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 43.9 0.00943   NR HEY0428600.1 2283092 g111122 i0 45.2 0.591549295774648 42 22 57.7 1 38 160 63 104 HEY0428600.1 NAD(P)-dependent alcohol dehydrogenase [Pyrinomonadaceae bacterium] diamond 126 43.9 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
32663919 32663919 PRJNA1150539_S_NODE_108020_length_230_cov_2.044586_g107424_i0 PRJNA1150539 108020 230 2.044586 4.7025478 Acidobacteriota bacterium 1978231 Bacteria Bacteria 42.7 0.0297   NR MBM3765365.1 1978231 g107424 i0 35.7 0.91304347826087 70 41 91.3 1 217 8 143 208 MBM3765365.1 hypothetical protein [Acidobacteriota bacterium] diamond 210 42.7 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;