RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1150539", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 2 ✖

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA1150539 · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15064412 15064412 PRJNA1150539_S_NODE_43132_length_323_cov_8.300000_g42536_i0 PRJNA1150539 43132 323 8.3 26.809 Myxococcota 2818505 Bacteria Bacteria 566 8.759999999999998e-157   NTclustered gi|730907528|gb|KP078182.1| 34034 g42536 i0 98.742 98.3931888544892 318 4 98 0 6 323 429 112 Uncultured delta proteobacterium clone oligo_Deltaproteobacteria_287 16S ribosomal RNA gene, partial sequence blastn 31781 566 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
27987944 27987944 PRJNA1150539_S_NODE_58725_length_296_cov_3.304933_g58129_i0 PRJNA1150539 58725 296 3.304933 9.78260168 Candidatus Zymogenus saltonus 2844893 Bacteria Bacteria 43.5 0.0286   NR MBN1574259.1 2844893 g58129 i0 36 0.760135135135135 75 46 76 2 281 57 143 215 MBN1574259.1 hypothetical protein [Candidatus Zymogenus saltonus] diamond 225 43.5 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Candidatus Zymogeniales Candidatus Zymogenaceae Candidatus Zymogenus Candidatus Zymogenus saltonus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;