RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1150539" and tax_clade = "core chlorophytes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 6 ✖

bioproject 1

  • PRJNA1150539 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15064530 15064530 PRJNA1150539_S_NODE_73192_length_275_cov_1.866337_g72596_i0 PRJNA1150539 73192 275 1.866337 5.13242675 Eukaryota 2759 Plants Plants 52.8 0.025   NTclustered gi|302836320|ref|XM_002949675.1| 3068 g72596 i0 100 0.203636363636364 28 0 10 0 33 60 484 457 Volvox carteri f. nagariensis uncharacterized protein (VOLCADRAFT_104367), partial mRNA blastn 56 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
24527505 24527505 PRJNA1150539_S_NODE_66760_length_284_cov_2.407583_g66164_i0 PRJNA1150539 66760 284 2.407583 6.83753572 uncultured Trebouxia photobiont 285713 Plants Plants 520 5.98e-143   NTclustered gi|1273623725|gb|KY033354.1| 285713 g66164 i0 99.648 100.580985915493 284 1 100 0 1 284 6208 6491 Uncultured Trebouxia photobiont voucher Lendemer 46119 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 28565 520 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia uncultured Trebouxia photobiont
26913602 26913602 PRJNA1150539_S_NODE_12762_length_417_cov_2.177326_g12167_i0 PRJNA1150539 12762 417 2.177326 9.07944942 Chlorella ohadii 2649997 Plants Plants 45.1 0.0368   NR KAI7835581.1 2649997 g12167 i0 37.1 0.640287769784173 89 41 55.4 2 329 99 877 962 KAI7835581.1 hypothetical protein COHA_010526 [Chlorella ohadii] diamond 267 45.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella ohadii
27040315 27040315 PRJNA1150539_S_NODE_101002_length_242_cov_7.520710_g100406_i0 PRJNA1150539 101002 242 7.52071 18.2001182 Auxenochlorella protothecoides 3075 Plants Plants 45.1 0.00564   NR RMZ53420.1 3075 g100406 i0 45.3 0.65702479338843 53 27 65.7 1 205 47 171 221 RMZ53420.1 hypothetical protein APUTEX25_004908, partial [Auxenochlorella protothecoides] diamond 159 45.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
32443376 32443376 PRJNA1150539_S_NODE_60339_length_294_cov_1.742081_g59743_i0 PRJNA1150539 60339 294 1.742081 5.12171814 Astrephomene gubernaculifera 47775 Plants Plants 43.1 0.0489   NR GFR43980.1 47775 g59743 i0 31.9 0.959183673469388 94 54 91.8 3 277 8 81 168 GFR43980.1 hypothetical protein Agub_g5124, partial [Astrephomene gubernaculifera] diamond 282 43.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Astrephomenaceae Astrephomene Astrephomene gubernaculifera
32789828 32789828 PRJNA1150539_S_NODE_88500_length_255_cov_2.532967_g87904_i0 PRJNA1150539 88500 255 2.532967 6.45906585 Ostreobium quekettii 121088 Plants Plants 42.7 0.0325   NR CAD7696493.1 121088 g87904 i0 44.4 0.423529411764706 36 16 37.6 1 227 132 36 71 CAD7696493.1 unnamed protein product [Ostreobium quekettii] diamond 108 42.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Ostreobiaceae Ostreobium Ostreobium quekettii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;