RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA1150539", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 5 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 5 ✖

bioproject 1

  • PRJNA1150539 · 5 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27609098 27609098 PRJNA1150539_S_NODE_45464_length_319_cov_2.768293_g44868_i0 PRJNA1150539 45464 319 2.768293 8.83085467 Victivallales bacterium 2212475 Bacteria Bacteria 43.5 0.0477   NR MFA6568812.1 2212475 g44868 i0 33.3 0.507836990595611 54 36 50.8 0 215 54 218 271 MFA6568812.1 VCBS repeat-containing protein [Victivallales bacterium] diamond 162 43.5 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales     Victivallales bacterium
29250655 29250655 PRJNA1150539_S_NODE_89309_length_254_cov_2.502762_g88713_i0 PRJNA1150539 89309 254 2.502762 6.35701548 Lentisphaeria bacterium 2053569 Bacteria Bacteria 42 0.0211   NR MBO7153113.1 2053569 g88713 i0 36.9 0.767716535433071 65 39 76.8 1 58 252 26 88 MBO7153113.1 hypothetical protein [Lentisphaeria bacterium] diamond 195 42 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium
30798475 30798475 PRJNA1150539_S_NODE_15514_length_401_cov_3.783537_g14919_i0 PRJNA1150539 15514 401 3.783537 15.17198337 Lentisphaeria bacterium 2053569 Bacteria Bacteria 145 7.19e-43   NR MBR4957523.1 2053569 g14919 i0 88 0.561097256857855 75 9 56.1 0 356 132 1 75 MBR4957523.1 hypothetical protein [Lentisphaeria bacterium] diamond 225 145 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium
30988267 30988267 PRJNA1150539_S_NODE_22054_length_375_cov_3.778146_g21458_i0 PRJNA1150539 22054 375 3.778146 14.1680475 Lentisphaeria bacterium 2053569 Bacteria Bacteria 43.5 0.0415   NR MDP7743837.1 2053569 g21458 i0 34.9 0.504 63 34 44.8 1 12 179 14 76 MDP7743837.1 hypothetical protein [Lentisphaeria bacterium] diamond 189 43.5 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium
32789819 32789819 PRJNA1150539_S_NODE_105460_length_235_cov_4.154321_g104864_i0 PRJNA1150539 105460 235 4.154321 9.76265435 Lentisphaerota bacterium 1932692 Bacteria Bacteria 160 1.8499999999999993e-43   NR MBE6398808.1 1932692 g104864 i0 96.1 0.982978723404255 77 3 98.3 0 3 233 657 733 MBE6398808.1 hypothetical protein [Lentisphaerota bacterium] diamond 231 160 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;