RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1150539", tax_clade = "PVC group" and tax_phylum = "Kiritimatiellota"

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tax_superkingdom 1

tax_phylum 1

  • Kiritimatiellota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA1150539 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27198110 27198110 PRJNA1150539_S_NODE_102122_length_241_cov_4.583333_g101526_i0 PRJNA1150539 102122 241 4.583333 11.04583253 Kiritimatiella glycovorans 1307763 Bacteria Bacteria 42.4 0.0469   NR WP_052880814.1 1307763 g101526 i0 35.3 0.846473029045643 68 37 79.7 2 33 224 106 170 WP_052880814.1 MFS transporter [Kiritimatiella glycovorans] diamond 204 42.4 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia Kiritimatiellales Kiritimatiellaceae Kiritimatiella Kiritimatiella glycovorans
28524752 28524752 PRJNA1150539_S_NODE_27227_length_360_cov_1.247387_g26631_i0 PRJNA1150539 27227 360 1.247387 4.4905932 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 45.1 0.0187   NR MBR4170657.1 2212473 g26631 i0 35.9 0.533333333333333 64 41 53.3 0 294 103 196 259 MBR4170657.1 hypothetical protein [Kiritimatiellia bacterium] diamond 192 45.1 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium
30482672 30482672 PRJNA1150539_S_NODE_105533_length_235_cov_3.197531_g104937_i0 PRJNA1150539 105533 235 3.197531 7.51419785 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 40.8 0.045   NR HOE61936.1 2212473 g104937 i0 38.5 0.663829787234043 52 32 66.4 0 34 189 20 71 HOE61936.1 DUF1080 domain-containing protein [Kiritimatiellia bacterium] diamond 156 40.8 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium
30798474 30798474 PRJNA1150539_S_NODE_107854_length_230_cov_2.929936_g107258_i0 PRJNA1150539 107854 230 2.929936 6.7388528 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 42.7 0.0306   NR MDD4017583.1 2212473 g107258 i0 33.3 0.782608695652174 60 40 78.3 0 6 185 208 267 MDD4017583.1 DUF5009 domain-containing protein [Kiritimatiellia bacterium] diamond 180 42.7 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;