RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1150539", tax_clade = "Amoebozoa" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 2 ✖

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA1150539 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10505554 10505554 PRJNA1150539_S_NODE_84229_length_260_cov_3.802139_g83633_i0 PRJNA1150539 84229 260 3.802139 9.8855614 Dictyostelium discoideum 44689 Evosea other_Eukaryota 65.8 3.04e-6   NTclustered gi|66803301|ref|XM_630402.1| 352472 g83633 i0 100 13.7307692307692 35 0 13 0 175 209 2744 2710 Dictyostelium discoideum AX4 hypothetical protein (pks39) mRNA, complete cds blastn 3570 65.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
21978680 21978680 PRJNA1150539_S_NODE_96318_length_247_cov_1.327586_g95722_i0 PRJNA1150539 96318 247 1.327586 3.27913742 Dictyostelium purpureum 5786 Evosea other_Eukaryota 60.2 1.33e-4   NTclustered gi|330795445|ref|XM_003285736.1| 5786 g95722 i0 92.683 1.92307692307692 41 3 17 0 52 92 247 287 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_97172), partial mRNA blastn 475 60.2 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;