RNAquarium Metadata Server
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contig_metadata

10 rows where bioproject = "PRJNA1146366" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 10 ✖

tax_clade 1

bioproject 1

  • PRJNA1146366 · 10 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2841118 2841118 PRJNA1146366_S_NODE_1403_length_293_cov_1.772727_g1400_i0 PRJNA1146366 1403 293 1.772727 5.19409011 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 364 3.069999999999999e-96   NTclustered gi|470510827|ref|XM_004351530.1| 1257118 g1400 i0 91.513 0.924914675767918 271 14 92 4 1 271 615 876 Acanthamoeba castellanii str. Neff Ser/Thr phosphatase family superfamily protein (ACA1_149950), partial mRNA blastn 271 364 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
4117288 4117288 PRJNA1146366_S_NODE_1324_length_298_cov_0.848889_g1321_i0 PRJNA1146366 1324 298 0.848889 2.52968922 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 363 1.1299999999999999e-95   NTclustered gi|470446854|ref|XM_004339956.1| 1257118 g1321 i0 94.828 0.778523489932886 232 12 78 0 33 264 354 585 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_208980), partial mRNA blastn 232 363 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
5393521 5393521 PRJNA1146366_S_NODE_2725_length_229_cov_3.230769_g2722_i0 PRJNA1146366 2725 229 3.230769 7.39846101 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 333 6.519999999999999e-87   NTclustered gi|470389894|ref|XM_004334473.1| 1257118 g2722 i0 97.436 0.851528384279476 195 5 85 0 35 229 561 367 Acanthamoeba castellanii str. Neff clathrin adaptor complex small chain subfamily protein (ACA1_309490), partial mRNA blastn 195 333 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
6136526 6136526 PRJNA1146366_S_NODE_1905_length_265_cov_1.682292_g1902_i0 PRJNA1146366 1905 265 1.682292 4.4580738 Acanthamoeba 5754 Discosea other_Eukaryota 477 3.369999999999999e-130   NTclustered gi|15778657|gb|AF414696.1|AF414696 5755 g1902 i0 99.242 5.98490566037736 264 2 99 0 1 264 386 123 Acanthamoeba castellanii profilin 1B mRNA, complete cds blastn 1586 477 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
6668181 6668181 PRJNA1146366_S_NODE_1086_length_316_cov_1.283951_g1083_i0 PRJNA1146366 1086 316 1.283951 4.05728516 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 444 4.18e-120   NTclustered gi|470486272|ref|XM_004344539.1| 1257118 g1083 i0 98.413 1.56645569620253 252 4 80 0 65 316 615 364 Acanthamoeba castellanii str. Neff Raslike protein 1, putative (ACA1_277750), partial mRNA blastn 495 444 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
7943376 7943376 PRJNA1146366_S_NODE_1207_length_306_cov_2.008584_g1204_i0 PRJNA1146366 1207 306 2.008584 6.14626704 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 475 1.4299999999999999e-129   NTclustered gi|470506207|ref|XM_004348670.1| 1257118 g1204 i0 98.872 0.869281045751634 266 3 87 0 41 306 396 131 Acanthamoeba castellanii str. Neff actin binding protein (ACA1_035360), partial mRNA blastn 266 475 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
7943383 7943383 PRJNA1146366_S_NODE_387_length_411_cov_2.739645_g384_i0 PRJNA1146366 387 411 2.739645 11.25994095 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 660 0   NTclustered gi|470509254|ref|XM_004349681.1| 1257118 g384 i0 100 81.2676399026764 357 0 87 0 55 411 489 133 Acanthamoeba castellanii str. Neff ribosomal protein S13p/S18e, putative (ACA1_034540), partial mRNA blastn 33401 660 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
13043971 13043971 PRJNA1146366_S_NODE_1551_length_283_cov_2.080952_g1548_i0 PRJNA1146366 1551 283 2.080952 5.88909416 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 459 1.3199999999999998e-124   NTclustered gi|470391451|ref|XM_004334622.1| 1257118 g1548 i0 98.462 2.26148409893993 260 4 92 0 24 283 1167 908 Acanthamoeba castellanii str. Neff ATP:L-methionine S-Adenosyltransferase (ACA1_091670), partial mRNA blastn 640 459 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
13043984 13043984 PRJNA1146366_S_NODE_2471_length_242_cov_1.384615_g2468_i0 PRJNA1146366 2471 242 1.384615 3.3507683 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 250 7.2e-62   NTclustered gi|2804253|dbj|AB010283.1| 5755 g2468 i0 86.864 1.95867768595041 236 16 95 6 1 230 458 684 Acanthamoeba castellanii mRNA for CSP21, complete cds blastn 474 250 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
15593189 15593189 PRJNA1146366_S_NODE_2593_length_236_cov_2.595092_g2590_i0 PRJNA1146366 2593 236 2.595092 6.12441712 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 316 6.8e-82   NTclustered gi|470431010|ref|XM_004338308.1| 1257118 g2590 i0 91.453 0.991525423728814 234 14 99 2 1 234 349 576 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_203980), partial mRNA blastn 234 316 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;