RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1146366" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1146366 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
290304 290304 PRJNA1146366_S_NODE_2101_length_255_cov_1.467033_g2098_i0 PRJNA1146366 2101 255 1.467033 3.74093415 Corynebacterium afermentans 38286 Bacteria Bacteria 425 1.18e-114   NTclustered gi|2531253808|gb|CP046530.1| 144184 g2098 i0 98.347 355.690196078431 242 4 95 0 13 254 639089 639330 Corynebacterium afermentans subsp. lipophilum strain DSM 44282 chromosome, complete genome blastn 90701 425 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium afermentans
7411569 7411569 PRJNA1146366_S_NODE_1166_length_309_cov_2.084746_g1163_i0 PRJNA1146366 1166 309 2.084746 6.44186514 Cutibacterium 1912216 Bacteria Bacteria 538 1.8199999999999993e-148   NTclustered gi|1446500593|gb|CP031442.1| 1747 g1163 i0 98.058 263.847896440129 309 6 100 0 1 309 55481 55789 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 81529 538 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
20160044 20160044 PRJNA1146366_S_NODE_1436_length_290_cov_4.023041_g1433_i0 PRJNA1146366 1436 290 4.023041 11.6668189 Micrococcus 1269 Bacteria Bacteria 525 1.32e-144   NTclustered gi|1891023613|gb|CP058971.1| 1270 g1433 i0 99.31 326.510344827586 290 2 100 0 1 290 347277 347566 Micrococcus luteus strain V017 chromosome, complete genome blastn 94688 525 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus luteus
21967142 21967142 PRJNA1146366_S_NODE_1598_length_280_cov_1.516908_g1595_i0 PRJNA1146366 1598 280 1.516908 4.2473424 Corynebacterium lujinxingii 2763010 Bacteria Bacteria 462 1.01e-125   NTclustered gi|1899778044|gb|CP061032.1| 2763010 g1595 i0 98.479 345.403571428571 263 3 96 1 1 263 1135687 1135948 Corynebacterium lujinxingii strain zg-917 chromosome, complete genome blastn 96713 462 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium lujinxingii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;