RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1146366" and tax_clade = "Sar"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA1146366 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20691805 20691805 PRJNA1146366_S_NODE_2157_length_253_cov_0.866667_g2154_i0 PRJNA1146366 2157 253 0.866667 2.19266751 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.006   NTclustered gi|325194928|emb|FR825725.1| 890382 g2154 i0 100 0.114624505928854 29 0 11 0 1 29 614 586 Albugo laibachii Nc14, genomic contig CONTIG_2727_NC14_v4_616_625 blastn 29 54.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
32694165 32694165 PRJNA1146366_S_NODE_1580_length_281_cov_1.418269_g1577_i0 PRJNA1146366 1580 281 1.418269 3.98533589 Stylonychia lemnae 5949 SAR_Eukaryotes SAR_Eukaryotes 43.5 0.0324   NR CDW73121.1 5949 g1577 i0 37.1 1.01423487544484 62 37 66.2 1 234 49 276 335 CDW73121.1 zinc carboxypeptidase family protein [Stylonychia lemnae] diamond 285 43.9 0.990888382687927 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;