RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1146029" and tax_phylum = "Candidatus Hydrogenedentota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Hydrogenedentota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1146029 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2840939 2840939 PRJNA1146029_P_NODE_19923_length_245_cov_0.895349_g19642_i0 PRJNA1146029 19923 245 0.895349 2.19360505 Candidatus Hydrogenedentales bacterium 3120109 Bacteria Bacteria 129 1.76e-34   NR MEX2016601.1 3120109 g19642 i0 71.6 2.93877551020408 81 23 99.2 0 245 3 42 122 MEX2016601.1 alpha/beta hydrolase [Candidatus Hydrogenedentales bacterium] diamond 720 129 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota Candidatus Hydrogenedentia Candidatus Hydrogenedentales     Candidatus Hydrogenedentales bacterium
15592860 15592860 PRJNA1146029_P_NODE_10613_length_287_cov_0.822430_g10332_i0 PRJNA1146029 10613 287 0.82243 2.3603741 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 281 3.11e-71   NTclustered gi|2621786419|emb|OY782877.1| 2030809 g10332 i0 87.55 44.4459930313589 249 24 86 6 36 283 2443163 2442921 MAG: Candidatus Hydrogenedentes bacterium isolate 28e603e2-5466-4732-bb1a-a7370d5bccbd genome assembly, chromosome: 1 blastn 12756 281 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
30165176 30165176 PRJNA1146029_P_NODE_20872_length_243_cov_0.905882_g20591_i0 PRJNA1146029 20872 243 0.905882 2.20129326 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 88.2 3.83e-18   NR MCH7959314.1 2030809 g20591 i0 52.6 0.962962962962963 78 35 93.8 1 16 243 624 701 MCH7959314.1 SDR family NAD(P)-dependent oxidoreductase [Candidatus Hydrogenedentota bacterium] diamond 234 88.2 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;