RNAquarium Metadata Server
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contig_metadata

13 rows where bioproject = "PRJNA1146029", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 13 ✖

tax_clade 1

  • Sar · 13 ✖

bioproject 1

  • PRJNA1146029 · 13 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1564850 1564850 PRJNA1146029_P_NODE_5462_length_373_cov_2.310000_g5184_i0 PRJNA1146029 5462 373 2.31 8.6163 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 202 1.54e-64   NR CEO97530.1 37360 g5184 i0 80.3 1.96246648793566 122 24 98.1 0 2 367 30 151 CEO97530.1 hypothetical protein PBRA_000875 [Plasmodiophora brassicae] diamond 732 202 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
5393423 5393423 PRJNA1146029_P_NODE_4205_length_418_cov_2.153623_g3927_i0 PRJNA1146029 4205 418 2.153623 9.00214414 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 183 1.7899999999999998e-56   NR CEP02640.1 37360 g3927 i0 72.9 0.925837320574163 129 35 92.6 0 30 416 13 141 CEP02640.1 hypothetical protein PBRA_002607 [Plasmodiophora brassicae] diamond 387 183 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
6667993 6667993 PRJNA1146029_P_NODE_1866_length_638_cov_1.753982_g1596_i0 PRJNA1146029 1866 638 1.753982 11.19040516 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 134 3.26e-36   NR CEP01632.1 37360 g1596 i0 64.3 0.540752351097179 115 41 54.1 0 45 389 18 132 CEP01632.1 hypothetical protein PBRA_008575 [Plasmodiophora brassicae] diamond 345 134 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
7943278 7943278 PRJNA1146029_P_NODE_3107_length_484_cov_2.243309_g2830_i0 PRJNA1146029 3107 484 2.243309 10.85761556 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 216 2.46e-67   NR CEO96095.1 37360 g2830 i0 65.1 0.942148760330578 152 53 94.2 0 28 483 1 152 CEO96095.1 hypothetical protein PBRA_004785 [Plasmodiophora brassicae] diamond 456 216 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
21967037 21967037 PRJNA1146029_P_NODE_4278_length_415_cov_1.576023_g4000_i0 PRJNA1146029 4278 415 1.576023 6.54049545 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 164 3.24e-49   NR SPQ93437.1 37360 g4000 i0 68.4 2.47228915662651 117 35 84.6 1 415 65 33 147 SPQ93437.1 unnamed protein product [Plasmodiophora brassicae] diamond 1026 164 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
27038922 27038922 PRJNA1146029_P_NODE_2382_length_557_cov_1.590909_g2107_i0 PRJNA1146029 2382 557 1.590909 8.86136313 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 111 4.79e-28   NR CEP02593.1 37360 g2107 i0 62 0.495511669658887 92 35 49.6 0 8 283 11 102 CEP02593.1 hypothetical protein PBRA_002561 [Plasmodiophora brassicae] diamond 276 111 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
27196819 27196819 PRJNA1146029_P_NODE_13442_length_269_cov_1.051020_g13161_i0 PRJNA1146029 13442 269 1.05102 2.8272438 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 92.8 9.69e-21   NR CEO99991.1 37360 g13161 i0 64.9 0.825278810408922 74 22 80.3 2 269 54 143 214 CEO99991.1 hypothetical protein PBRA_007725 [Plasmodiophora brassicae] diamond 222 92.8 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
28428692 28428692 PRJNA1146029_P_NODE_1426_length_744_cov_2.114754_g1178_i0 PRJNA1146029 1426 744 2.114754 15.73376976 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 349 9.46e-118   NR CEP01219.1 37360 g1178 i0 81.4 4.00403225806452 253 41 99.6 1 742 2 51 303 CEP01219.1 hypothetical protein PBRA_001825 [Plasmodiophora brassicae] diamond 2979 349 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
28933869 28933869 PRJNA1146029_P_NODE_19688_length_245_cov_0.895349_g19407_i0 PRJNA1146029 19688 245 0.895349 2.19360505 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 76.3 1.96e-14   NR CEP02444.1 37360 g19407 i0 58.1 0.759183673469388 62 26 75.9 0 245 60 206 267 CEP02444.1 hypothetical protein PBRA_009028 [Plasmodiophora brassicae] diamond 186 76.3 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
29028807 29028807 PRJNA1146029_P_NODE_5688_length_367_cov_1.309524_g5410_i0 PRJNA1146029 5688 367 1.309524 4.80595308 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 70.5 1.59e-12   NR CEO99081.1 37360 g5410 i0 65.1 0.35149863760218 43 15 35.1 0 2 130 100 142 CEO99081.1 hypothetical protein PBRA_007195 [Plasmodiophora brassicae] diamond 129 70.5 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
30386950 30386950 PRJNA1146029_P_NODE_21373_length_242_cov_0.911243_g21092_i0 PRJNA1146029 21373 242 0.911243 2.20520806 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 84.3 8.11e-17   NR CEO98822.1 37360 g21092 i0 46.8 1.95867768595041 79 41 96.7 1 242 9 157 235 CEO98822.1 hypothetical protein PBRA_006936, partial [Plasmodiophora brassicae] diamond 474 84.3 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
30702472 30702472 PRJNA1146029_P_NODE_6914_length_338_cov_1.743396_g6636_i0 PRJNA1146029 6914 338 1.743396 5.89267848 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 168 6.99e-50   NR CEP01968.1 37360 g6636 i0 73.9 1.97041420118343 111 29 98.5 0 6 338 61 171 CEP01968.1 hypothetical protein PBRA_002233 [Plasmodiophora brassicae] diamond 666 168 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
31207561 31207561 PRJNA1146029_P_NODE_1855_length_639_cov_1.840989_g1585_i0 PRJNA1146029 1855 639 1.840989 11.76391971 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 140 1.42e-34   NR CEO95180.1 37360 g1585 i0 40.7 1.99530516431925 214 100 95.3 9 611 3 149 346 CEO95180.1 hypothetical protein PBRA_003946 [Plasmodiophora brassicae] diamond 1275 140 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;