RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA1146029", tax_clade = "Discoba" and tax_phylum = "Heterolobosea"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 7 ✖

tax_clade 1

  • Discoba · 7 ✖

bioproject 1

  • PRJNA1146029 · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2840826 2840826 PRJNA1146029_P_NODE_13543_length_268_cov_1.276923_g13262_i0 PRJNA1146029 13543 268 1.276923 3.42215364 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 125 1.84e-33   NR XP_002682096.1 5762 g13262 i0 68.5 2.02611940298507 89 28 99.6 0 268 2 144 232 XP_002682096.1 uncharacterized protein NAEGRDRAFT_30192 [Naegleria gruberi] diamond 543 125 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
12512317 12512317 PRJNA1146029_P_NODE_18430_length_247_cov_0.885057_g18149_i0 PRJNA1146029 18430 247 0.885057 2.18609079 Naegleria 5761 Heterolobosea other_Eukaryota 457 4.05e-124   NTclustered gi|2618963742|gb|OR769034.1| 5762 g18149 i0 100 10.2834008097166 247 0 100 0 1 247 5686 5440 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 2540 457 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
16867407 16867407 PRJNA1146029_P_NODE_9734_length_292_cov_2.059361_g9453_i0 PRJNA1146029 9734 292 2.059361 6.01333412 Naegleria 5761 Heterolobosea other_Eukaryota 161 5.5e-47   NR XP_002676073.1 5762 g9453 i0 83.5 1.99315068493151 97 16 99.7 0 291 1 68 164 XP_002676073.1 abc transporter [Naegleria gruberi] diamond 582 161 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
21435508 21435508 PRJNA1146029_P_NODE_11297_length_282_cov_2.200957_g11016_i0 PRJNA1146029 11297 282 2.200957 6.20669874 Naegleria 5761 Heterolobosea other_Eukaryota 215 3.13e-51   NTclustered gi|2031946985|emb|OD958550.1| 5763 g11016 i0 82.239 43.4858156028369 259 36 92 5 1 259 3012 3260 Naegleria fowleri Karachi_NF001 strain blastn 12263 215 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
21967070 21967070 PRJNA1146029_P_NODE_6438_length_349_cov_0.840580_g6160_i0 PRJNA1146029 6438 349 0.84058 2.9336242 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 599 9.389999999999997e-167   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g6160 i0 97.708 22.7363896848138 349 7 100 1 1 349 3202 3549 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 7935 599 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
28291077 28291077 PRJNA1146029_P_NODE_11846_length_279_cov_1.422330_g11565_i0 PRJNA1146029 11846 279 1.42233 3.9683007 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 42.4 0.0354   NR XP_044549456.1 51637 g11565 i0 41.5 0.806451612903226 41 24 44.1 0 275 153 96 136 XP_044549456.1 uncharacterized protein C9374_003278 [Naegleria lovaniensis] diamond 225 42.4 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis
29975796 29975796 PRJNA1146029_P_NODE_14031_length_264_cov_1.612565_g13750_i0 PRJNA1146029 14031 264 1.612565 4.2571716 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 67.4 1.02e-10   NR XP_044544450.1 51637 g13750 i0 45.7 1.86363636363636 81 41 89.8 2 245 9 1658 1737 XP_044544450.1 uncharacterized protein C9374_009899 [Naegleria lovaniensis] diamond 492 67.4 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;