RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1146029", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 4 ✖

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA1146029 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
290025 290025 PRJNA1146029_P_NODE_15261_length_255_cov_2.285714_g14980_i0 PRJNA1146029 15261 255 2.285714 5.8285707 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 180 1.02e-40   NTclustered gi|909719645|gb|KT185625.1| 5778 g14980 i0 79.848 49.1294117647059 263 40 99 12 1 254 4484 4742 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 12528 180 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
2308942 2308942 PRJNA1146029_P_NODE_18982_length_246_cov_0.890173_g18701_i0 PRJNA1146029 18982 246 0.890173 2.18982558 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 449 6.74e-122   NTclustered gi|300078496|gb|GU001158.1| 5778 g18701 i0 99.593 7.04065040650407 246 1 100 0 1 246 957 1202 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1732 449 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
11236919 11236919 PRJNA1146029_P_NODE_3929_length_431_cov_1.620112_g3651_i0 PRJNA1146029 3929 431 1.620112 6.98268272 Chaos 160821 Tubulinea other_Eukaryota 429 1.64e-115   NTclustered gi|17902587|emb|AJ314606.1| 160822 g3651 i0 91.167 72.1670533642691 317 26 74 1 106 422 926 1240 Chaos nobile partial 16S rRNA gene, strain CCAP 1511/2 blastn 31104 433 0.990762124711316 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Chaos Chaos nobile
14318999 14318999 PRJNA1146029_P_NODE_17432_length_249_cov_0.875000_g17151_i0 PRJNA1146029 17432 249 0.875 2.17875 Rhizamoeba saxonica 200886 Tubulinea other_Eukaryota 191 4.58e-44   NTclustered gi|300078497|gb|GU001159.1| 200886 g17151 i0 84.896 73.574297188755 192 25 76 3 1 190 4128 4317 Rhizamoeba saxonica 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 18320 191 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Rhizamoeba Rhizamoeba saxonica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;