RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1145997" and tax_phylum = "Chytridiomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1145997 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20690681 20690681 PRJNA1145997_P_NODE_20997_length_659_cov_6.663823_g18423_i0 PRJNA1145997 20997 659 6.663823 43.91459357 Polychytrium aggregatum 110093 Fungi Fungi 285 5.94e-72   NTclustered gi|2432159776|ref|XM_053111801.1| 110093 g18423 i0 81.215 16.2215477996965 362 61 54 7 52 409 73 431 Polychytrium aggregatum ribosomal protein S8e/ribosomal biogenesis NSA2 (BJ171DRAFT_514033), mRNA blastn 10690 285 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
30153979 30153979 PRJNA1145997_P_NODE_21692_length_635_cov_4.169039_g19098_i0 PRJNA1145997 21692 635 4.169039 26.47339765 Fungi 4751 Fungi Fungi 139 2.88e-38   NR XP_016609616.1 645134 g19098 i0 59.5 2.87244094488189 121 48 56.7 1 264 623 1 121 XP_016609616.1 ribosomal protein L11 [Spizellomyces punctatus DAOM BR117] diamond 1824 140 0.992857142857143 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;