RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1145997" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1145997 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7942569 7942569 PRJNA1145997_P_NODE_37547_length_284_cov_7.597156_g34928_i0 PRJNA1145997 37547 284 7.597156 21.57592304 Stephanodiscus triporus 2934178 SAR_Eukaryotes SAR_Eukaryotes 73.9 3.5e-13   NR KAL3776289.1 2934178 g34928 i0 87.5 0.422535211267606 40 5 42.3 0 25 144 268 307 KAL3776289.1 hypothetical protein ACHAW5_002598 [Stephanodiscus triporus] diamond 120 73.9 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Stephanodiscus Stephanodiscus triporus
18884950 18884950 PRJNA1145997_P_NODE_24055_length_550_cov_3.733753_g21444_i0 PRJNA1145997 24055 550 3.733753 20.5356415 Discostella pseudostelligera 259834 SAR_Eukaryotes SAR_Eukaryotes 142 4.9900000000000003e-36   NR KAL3760366.1 259834 g21444 i0 63.7 0.556363636363636 102 37 55.6 0 548 243 354 455 KAL3760366.1 LOW QUALITY PROTEIN: hypothetical protein ACHAWU_000341 [Discostella pseudostelligera] diamond 306 142 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Discostella Discostella pseudostelligera

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;