RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA1145997", tax_phylum = "Armatimonadota" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Armatimonadota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1145997 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26975635 26975635 PRJNA1145997_P_NODE_38022_length_281_cov_1.125000_g35403_i0 PRJNA1145997 38022 281 1.125 3.16125 Armatimonadota bacterium 2033014 Bacteria Bacteria 174 8.61e-51   NR HTE16855.1 2033014 g35403 i0 81.7 0.99288256227758 93 17 99.3 0 279 1 22 114 HTE16855.1 replication initiator protein A [Armatimonadota bacterium] diamond 279 174 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
31207551 31207551 PRJNA1145997_P_NODE_45555_length_247_cov_4.706897_g42936_i0 PRJNA1145997 45555 247 4.706897 11.62603559 Armatimonadota bacterium 2033014 Bacteria Bacteria 99.4 4.66e-22   NR MBC8136791.1 2033014 g42936 i0 69.7 0.801619433198381 66 20 80.2 0 23 220 226 291 MBC8136791.1 alpha-amylase [Armatimonadota bacterium] diamond 198 99.4 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
32188727 32188727 PRJNA1145997_P_NODE_45578_length_247_cov_2.954023_g42959_i0 PRJNA1145997 45578 247 2.954023 7.29643681 Armatimonadota bacterium 2033014 Bacteria Bacteria 163 8.31e-49   NR MBC7805454.1 2033014 g42959 i0 92.6 1.96761133603239 81 6 98.4 0 3 245 10 90 MBC7805454.1 DNA primase [Armatimonadota bacterium] diamond 486 163 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;