RNAquarium Metadata Server
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contig_metadata

12 rows where bioproject = "PRJNA1145997", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 12 ✖

tax_kingdom 1

  • Pseudomonadati · 12 ✖

bioproject 1

  • PRJNA1145997 · 12 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
289668 289668 PRJNA1145997_P_NODE_49281_length_242_cov_0.923077_g46662_i0 PRJNA1145997 49281 242 0.923077 2.23384634 Campylobacter concisus 199 Bacteria Bacteria 403 5.22e-108   NTclustered gi|1935895612|gb|CP049232.1| 199 g46662 i0 96.694 22.7314049586777 242 8 100 0 1 242 52944 52703 Campylobacter concisus strain H9O-S2 chromosome, complete genome blastn 5501 403 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus
4116642 4116642 PRJNA1145997_P_NODE_45264_length_248_cov_0.891429_g42645_i0 PRJNA1145997 45264 248 0.891429 2.21074392 Campylobacter concisus 199 Bacteria Bacteria 387 5.409999999999998e-103   NTclustered gi|1938717787|gb|CP060705.1| 199 g42645 i0 94.758 18.3508064516129 248 13 100 0 1 248 29762 30009 Campylobacter concisus strain P13UCO-S1 chromosome, complete genome blastn 4551 387 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus
11768341 11768341 PRJNA1145997_P_NODE_47710_length_244_cov_0.912281_g45091_i0 PRJNA1145997 47710 244 0.912281 2.22596564 Campylobacter showae 204 Bacteria Bacteria 396 8.829999999999997e-106   NTclustered gi|1483583529|emb|LT631453.1| 204 g45091 i0 95.902 9.98360655737705 244 10 100 0 1 244 691113 690870 Campylobacter showae strain B91_SCBr genome assembly, chromosome: I blastn 2436 396 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter showae
14318593 14318593 PRJNA1145997_P_NODE_48472_length_243_cov_0.917647_g45853_i0 PRJNA1145997 48472 243 0.917647 2.22988221 Campylobacter ureolyticus 827 Bacteria Bacteria 289 1.53e-73   NTclustered gi|1966876394|gb|CP068487.1| 827 g45853 i0 88.066 15.1481481481481 243 29 100 0 1 243 640816 641058 Campylobacter ureolyticus strain FDAARGOS_1102 chromosome blastn 3681 289 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter ureolyticus
18141350 18141350 PRJNA1145997_P_NODE_45975_length_247_cov_0.896552_g43356_i0 PRJNA1145997 45975 247 0.896552 2.21448344 Campylobacter showae 204 Bacteria Bacteria 361 3.27e-95   NTclustered gi|1483583529|emb|LT631453.1| 204 g43356 i0 93.416 6.51417004048583 243 16 98 0 1 243 1171638 1171396 Campylobacter showae strain B91_SCBr genome assembly, chromosome: I blastn 1609 361 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter showae
23242103 23242103 PRJNA1145997_P_NODE_50899_length_221_cov_7.925676_g48280_i0 PRJNA1145997 50899 221 7.925676 17.515743959999998 Campylobacter rectus 203 Bacteria Bacteria 364 2.2199999999999998e-96   NTclustered gi|1622745323|gb|CP012543.1| 203 g48280 i0 99.5 205.696832579186 200 1 90 0 1 200 159785 159586 Campylobacter rectus strain ATCC 33238, complete genome blastn 45459 364 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter rectus
27102083 27102083 PRJNA1145997_P_NODE_34342_length_317_cov_1.709016_g31723_i0 PRJNA1145997 34342 317 1.709016 5.41758072 Helicobacter pylori 210 Bacteria Bacteria 61.6 1e-9   NR GAA6799321.1 210 g31723 i0 100 0.246056782334385 26 0 24.6 0 21 98 1 26 GAA6799321.1 hypothetical protein Kyoto200A_1680 [Helicobacter pylori] diamond 78 61.6 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
27260302 27260302 PRJNA1145997_P_NODE_46103_length_247_cov_0.896552_g43484_i0 PRJNA1145997 46103 247 0.896552 2.21448344 Campylobacter ureolyticus 827 Bacteria Bacteria 76.6 3.92e-14   NR WP_024962140.1 827 g43484 i0 56.3 0.862348178137652 71 31 86.2 0 33 245 335 405 WP_024962140.1 MotA/TolQ/ExbB proton channel family protein [Campylobacter ureolyticus] diamond 213 76.6 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter ureolyticus
27639425 27639425 PRJNA1145997_P_NODE_44224_length_250_cov_0.881356_g41605_i0 PRJNA1145997 44224 250 0.881356 2.20339 Campylobacter rectus 203 Bacteria Bacteria 85.1 2.07e-18   NR WP_276712189.1 203 g41605 i0 71.2 1.248 52 15 62.4 0 3 158 65 116 WP_276712189.1 tetratricopeptide repeat protein, partial [Campylobacter rectus] diamond 312 85.1 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter rectus
27659882 27659882 PRJNA1145997_P_NODE_42864_length_252_cov_0.871508_g40245_i0 PRJNA1145997 42864 252 0.871508 2.19620016 Pseudomonadati 3379134 Bacteria Bacteria 148 1.22e-43   NR WP_298104437.1 218934 g40245 i0 94 1.97619047619048 83 5 98.8 0 250 2 5 87 WP_298104437.1 DUF4837 family protein, partial [uncultured Campylobacter sp.] diamond 498 148 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter uncultured Campylobacter sp.
28827789 28827789 PRJNA1145997_P_NODE_48228_length_243_cov_1.494118_g45609_i0 PRJNA1145997 48228 243 1.494118 3.63070674 Bacteria 2 Bacteria Bacteria 120 1.65e-29   NR MBS6285797.1 199 g45609 i0 72.5 11.8518518518519 80 22 98.8 0 2 241 756 835 MBS6285797.1 AAA family ATPase [Campylobacter concisus] diamond 2880 120 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus
32820212 32820212 PRJNA1145997_P_NODE_46380_length_246_cov_0.901734_g43761_i0 PRJNA1145997 46380 246 0.901734 2.21826564 Campylobacter curvus 200 Bacteria Bacteria 53.5 5.39e-6   NR WP_169777917.1 200 g43761 i0 43.4 0.646341463414634 53 30 64.6 0 235 77 254 306 WP_169777917.1 Gfo/Idh/MocA family protein [Campylobacter curvus] diamond 159 53.5 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter curvus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;