RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

25 rows where bioproject = "PRJNA1145997" and tax_kingdom = "Methanobacteriati"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 25 ✖

bioproject 1

  • PRJNA1145997 · 25 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2840389 2840389 PRJNA1145997_P_NODE_42323_length_253_cov_0.866667_g39704_i0 PRJNA1145997 42323 253 0.866667 2.19266751 Halobaculum sp. CBA1158 2904243 Archaea Archaea 446 9.01e-121   NTclustered gi|2176096791|gb|CP090373.1| 2904243 g39704 i0 98.419 6 253 4 100 0 1 253 68386 68638 Halobaculum sp. CBA1158 plasmid pCBA1158-2, complete sequence blastn 1518 446 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halobaculum Halobaculum sp. CBA1158
2840470 2840470 PRJNA1145997_P_NODE_47223_length_245_cov_0.906977_g44604_i0 PRJNA1145997 47223 245 0.906977 2.22209365 Natronomonas gomsonensis 1046043 Archaea Archaea 176 1.26e-39   NTclustered gi|2273673090|gb|CP101323.1| 1046043 g44604 i0 80.328 0.995918367346939 244 38 98 7 2 240 1766427 1766189 Natronomonas gomsonensis strain KCTC 4088 chromosome, complete genome blastn 244 176 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Natronomonas Natronomonas gomsonensis
4861509 4861509 PRJNA1145997_P_NODE_29844_length_388_cov_1.485714_g27226_i0 PRJNA1145997 29844 388 1.485714 5.76457032 Thermococcus 2263 Archaea Archaea 250 4.72e-74   NR WP_167728776.1 163002 g27226 i0 100 7.91752577319588 128 0 99 0 386 3 1679 1806 WP_167728776.1 DNA polymerase domain-containing protein [Thermococcus sp. 9N3] diamond 3072 250 1 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus sp. 9N3
6136386 6136386 PRJNA1145997_P_NODE_46085_length_247_cov_0.896552_g43466_i0 PRJNA1145997 46085 247 0.896552 2.21448344 Haloferacaceae archaeon 2080321 Archaea Archaea 124 3.14e-33   NR MDR9412284.1 2080321 g43466 i0 66.7 0.983805668016194 81 27 98.4 0 3 245 131 211 MDR9412284.1 thymidylate synthase [Haloferacaceae archaeon] diamond 243 124 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae   Haloferacaceae archaeon
6666856 6666856 PRJNA1145997_P_NODE_15206_length_927_cov_17.114754_g13064_i0 PRJNA1145997 15206 927 17.114754 158.65376958 Methanobacterium formicicum 2162 Archaea Archaea 1635 0   NTclustered gi|683509033|emb|LN515531.1| 2162 g13064 i0 99.888 5.56850053937433 889 0 96 1 22 910 1213491 1214378 Methanobacterium formicicum genome assembly, chromosome: chrI blastn 5162 1635 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium formicicum
10493269 10493269 PRJNA1145997_P_NODE_43929_length_250_cov_0.881356_g41310_i0 PRJNA1145997 43929 250 0.881356 2.20339 Halobacterium wangiae 2902623 Archaea Archaea 412 9.02e-111   NTclustered gi|2168769890|gb|CP089588.1| 2902623 g41310 i0 96.4 102.748 250 9 100 0 1 250 2184963 2185212 Halobacterium wangiae strain Gai3-17 chromosome, complete genome blastn 25687 412 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halobacterium Halobacterium wangiae
13042922 13042922 PRJNA1145997_P_NODE_22471_length_606_cov_4.065666_g19867_i0 PRJNA1145997 22471 606 4.065666 24.63793596 Haloplanus rubicundus 1547898 Archaea Archaea 54.7 0.017   NTclustered gi|1434708495|gb|CP031148.1| 1547898 g19867 i0 84.483 0.191419141914191 58 5 9 3 265 319 1138687 1138743 Haloplanus rubicundus strain CBA1112 chromosome, complete genome blastn 116 54.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloplanus Haloplanus rubicundus
20691124 20691124 PRJNA1145997_P_NODE_44177_length_250_cov_0.881356_g41558_i0 PRJNA1145997 44177 250 0.881356 2.20339 Haloarcula montana 3111776 Archaea Archaea 110 1.32e-19   NTclustered gi|2648521790|gb|CP142027.1| 3111776 g41558 i0 89.655 0.564 87 8 34 1 132 217 796808 796722 Haloarcula sp. GH36 chromosome, complete genome blastn 141 110 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Haloarcula Haloarcula montana
21966412 21966412 PRJNA1145997_P_NODE_41798_length_255_cov_1.714286_g39179_i0 PRJNA1145997 41798 255 1.714286 4.3714293 Natronomonas moolapensis 416273 Archaea Archaea 311 3.46e-80   NTclustered gi|452081962|emb|HF582854.1| 268739 g39179 i0 88.627 4.29803921568627 255 29 100 0 1 255 2653239 2653493 Natronomonas moolapensis 8.8.11 complete genome blastn 1096 311 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Natronomonas Natronomonas moolapensis
21966417 21966417 PRJNA1145997_P_NODE_42098_length_253_cov_2.344444_g39479_i0 PRJNA1145997 42098 253 2.344444 5.93144332 Halodesulfurarchaeum formicicum 1873524 Archaea Archaea 207 4.63e-49   NTclustered gi|1082264851|gb|CP016070.1| 1873524 g39479 i0 81.569 12.0869565217391 255 43 100 4 1 253 1517460 1517712 Halodesulfurarchaeum formicicum strain HTSR1 chromosome, complete genome blastn 3058 207 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halodesulfurarchaeum Halodesulfurarchaeum formicicum
24515362 24515362 PRJNA1145997_P_NODE_37140_length_288_cov_1.088372_g34521_i0 PRJNA1145997 37140 288 1.088372 3.13451136 Natronomonas moolapensis 416273 Archaea Archaea 416 8.2e-112   NTclustered gi|452081962|emb|HF582854.1| 268739 g34521 i0 92.708 37.03125 288 21 100 0 1 288 2473471 2473758 Natronomonas moolapensis 8.8.11 complete genome blastn 10665 416 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Natronomonas Natronomonas moolapensis
26785888 26785888 PRJNA1145997_P_NODE_38281_length_279_cov_1.208738_g35662_i0 PRJNA1145997 38281 279 1.208738 3.37237902 Methanobacteriota archaeon 2026739 Archaea Archaea 157 5.62e-47   NR MCH7662100.1 2026739 g35662 i0 82.8 1 93 16 100 0 1 279 73 165 MCH7662100.1 hypothetical protein [Methanobacteriota archaeon] diamond 279 157 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
29049096 29049096 PRJNA1145997_P_NODE_42468_length_253_cov_0.866667_g39849_i0 PRJNA1145997 42468 253 0.866667 2.19266751 Halorubrum 56688 Archaea Archaea 159 5.78e-44   NR WP_394348709.1 413815 g39849 i0 90.5 7.92094861660079 84 8 99.6 0 2 253 77 160 WP_394348709.1 transposase [Halorubrum cibi] diamond 2004 160 0.99375 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum cibi
29722827 29722827 PRJNA1145997_P_NODE_43490_length_251_cov_0.876404_g40871_i0 PRJNA1145997 43490 251 0.876404 2.19977404 Halococcus hamelinensis 332168 Archaea Archaea 165 2.54e-48   NR WP_007691804.1 332168 g40871 i0 97.6 0.99203187250996006 83 2 99.2 0 249 1 131 213 WP_007691804.1 glycerophosphodiester phosphodiesterase [Halococcus hamelinensis] diamond 249 165 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halococcus Halococcus hamelinensis
30228474 30228474 PRJNA1145997_P_NODE_48872_length_242_cov_1.497041_g46253_i0 PRJNA1145997 48872 242 1.497041 3.62283922 Halanaeroarchaeum sulfurireducens 1604004 Archaea Archaea 135 4.27e-38   NR WP_054519980.1 1604004 g46253 i0 83.8 1.98347107438017 80 13 99.2 0 1 240 89 168 WP_054519980.1 RNA 2',3'-cyclic phosphodiesterase [Halanaeroarchaeum sulfurireducens] diamond 480 135 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halanaeroarchaeum Halanaeroarchaeum sulfurireducens
30607557 30607557 PRJNA1145997_P_NODE_34093_length_320_cov_1.174089_g31474_i0 PRJNA1145997 34093 320 1.174089 3.7570848 Halodesulfurarchaeum sp. 1980530 Archaea Archaea 130 7.89e-35   NR MDZ7850960.1 1980530 g31474 i0 66.7 1.96875 105 35 98.4 0 315 1 1 105 MDZ7850960.1 hypothetical protein [Halodesulfurarchaeum sp.] diamond 630 130 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halodesulfurarchaeum Halodesulfurarchaeum sp.
30786160 30786160 PRJNA1145997_P_NODE_48394_length_243_cov_0.917647_g45775_i0 PRJNA1145997 48394 243 0.917647 2.22988221 Halobacteriales 2235 Archaea Archaea 73.6 3.83e-14   NR AHG05206.1 751944 g45775 i0 63 1.33333333333333 54 20 66.7 0 77 238 1 54 AHG05206.1 hypothetical protein HALDL1_06220 [Halobacterium sp. DL1] diamond 324 73.6 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halobacterium Halobacterium sp. DL1
30955461 30955461 PRJNA1145997_P_NODE_43494_length_251_cov_0.876404_g40875_i0 PRJNA1145997 43494 251 0.876404 2.19977404 Halanaeroarchaeum sp. 1963275 Archaea Archaea 162 3.8e-46   NR MFB6134688.1 1963275 g40875 i0 85.5 1.9840637450199201 83 12 99.2 0 249 1 75 157 MFB6134688.1 NAD(P)/FAD-dependent oxidoreductase [Halanaeroarchaeum sp.] diamond 498 162 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halanaeroarchaeum Halanaeroarchaeum sp.
31366342 31366342 PRJNA1145997_P_NODE_48056_length_244_cov_0.912281_g45437_i0 PRJNA1145997 48056 244 0.912281 2.22596564 Haloarcula pellucida 1427151 Archaea Archaea 84.3 3.24e-18   NR WP_189002074.1 1427151 g45437 i0 64.5 0.762295081967213 62 22 76.2 0 196 11 4 65 WP_189002074.1 3'-5' exonuclease [Haloarcula pellucida] diamond 186 84.3 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Haloarcula Haloarcula pellucida
31576556 31576556 PRJNA1145997_P_NODE_48876_length_242_cov_1.479290_g46257_i0 PRJNA1145997 48876 242 1.47929 3.5798818 Methanothrix 2222 Archaea Archaea 135 5.259999999999998e-35   NR WP_276838039.1 2222 g46257 i0 83.8 2.97520661157025 80 13 99.2 0 241 2 307 386 WP_276838039.1 MULTISPECIES: GmrSD restriction endonuclease domain-containing protein [Methanothrix] diamond 720 135 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix  
32335962 32335962 PRJNA1145997_P_NODE_43459_length_251_cov_0.876404_g40840_i0 PRJNA1145997 43459 251 0.876404 2.19977404 Haloarculaceae 1963268 Archaea Archaea 43.9 0.00449   NR WP_276413083.1 2237 g40840 i0 64.3 1.23107569721116 28 10 33.5 0 250 167 40 67 WP_276413083.1 MULTISPECIES: DUF5615 family PIN-like protein [Haloarcula] diamond 309 43.9 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Haloarcula  
32442051 32442051 PRJNA1145997_P_NODE_47559_length_244_cov_1.701754_g44940_i0 PRJNA1145997 47559 244 1.701754 4.15227976 Halopenitus sp. 1979403 Archaea Archaea 153 5.63e-41   NR MFB6236223.1 1979403 g44940 i0 98.7 0.922131147540984 75 1 92.2 0 15 239 1 75 MFB6236223.1 ATP-binding protein [Halopenitus sp.] diamond 225 153 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halopenitus Halopenitus sp.
32683032 32683032 PRJNA1145997_P_NODE_48060_length_244_cov_0.912281_g45441_i0 PRJNA1145997 48060 244 0.912281 2.22596564 Halodesulfurarchaeum 1980514 Archaea Archaea 134 9.14e-36   NR MFB6149070.1 1904752 g45441 i0 81.3 2.93852459016393 80 15 98.4 0 242 3 200 279 MFB6149070.1 MFS transporter [Halobacteriales archaeon] diamond 717 135 0.992592592592593 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales     Halobacteriales archaeon
32694145 32694145 PRJNA1145997_P_NODE_43360_length_251_cov_0.876404_g40741_i0 PRJNA1145997 43360 251 0.876404 2.19977404 Halobacterium sp. NMX12-1 3166650 Archaea Archaea 81.6 8.43e-16   NR WP_353635661.1 3166650 g40741 i0 58 1.93625498007968 81 33 96.8 1 251 9 789 868 WP_353635661.1 hypothetical protein [Halobacterium sp. NMX12-1] diamond 486 81.6 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halobacterium Halobacterium sp. NMX12-1
32788570 32788570 PRJNA1145997_P_NODE_48860_length_242_cov_1.668639_g46241_i0 PRJNA1145997 48860 242 1.668639 4.03810638 Halanaeroarchaeum sp. HSR-CO 2866382 Archaea Archaea 151 8.119999999999997e-42   NR WP_259518758.1 2866382 g46241 i0 95 0.991735537190083 80 4 99.2 0 240 1 211 290 WP_259518758.1 ABC transporter substrate-binding protein [Halanaeroarchaeum sp. HSR-CO] diamond 240 151 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halanaeroarchaeum Halanaeroarchaeum sp. HSR-CO

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;