RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1145997", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1145997 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16335995 16335995 PRJNA1145997_P_NODE_50013_length_234_cov_16.745342_g47394_i0 PRJNA1145997 50013 234 16.745342 39.18410028 Viridiplantae 33090 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.021   NTclustered gi|1673118409|ref|XM_029364605.1| 94643 g47394 i0 100 4.18803418803419 28 0 12 0 15 42 195 168 Besnoitia besnoiti uncharacterized protein (BESB_061910), partial mRNA blastn 980 52.8 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Besnoitia Besnoitia besnoiti
16866558 16866558 PRJNA1145997_P_NODE_32454_length_341_cov_9.473881_g29835_i0 PRJNA1145997 32454 341 9.473881 32.30593421 Toxoplasma gondii 5811 SAR_Eukaryotes SAR_Eukaryotes 58.4 6.93e-4   NTclustered gi|820700576|tpe|LN714500.1| 432359 g29835 i0 100 0.483870967741935 31 0 9 0 302 332 3259770 3259800 TPA_asm: Toxoplasma gondii VEG, chromosome chrX, complete genome blastn 165 58.4 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Toxoplasma Toxoplasma gondii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;