RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1145997", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Altimarinota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA1145997 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6667613 6667613 PRJNA1145997_P_NODE_51086_length_216_cov_18.657343_g48467_i0 PRJNA1145997 51086 216 18.657343 40.29986088 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 123 1.02e-31   NR NRH21425.1 2044595 g48467 i0 89.4 0.916666666666667 66 7 91.7 0 212 15 1 66 NRH21425.1 elongation factor Tu [Candidatus Altimarinota bacterium] diamond 198 123 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
30797174 30797174 PRJNA1145997_P_NODE_44974_length_248_cov_1.622857_g42355_i0 PRJNA1145997 44974 248 1.622857 4.02468536 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 123 1.0999999999999999e-33   NR MBF0981713.1 2044595 g42355 i0 88.1 1.62096774193548 67 8 81 0 247 47 55 121 MBF0981713.1 S-layer homology domain-containing protein [Candidatus Altimarinota bacterium] diamond 402 123 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
32820213 32820213 PRJNA1145997_P_NODE_47120_length_245_cov_0.906977_g44501_i0 PRJNA1145997 47120 245 0.906977 2.22209365 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 163 1.83e-44   NR RKW21653.1 2044595 g44501 i0 100 0.991836734693878 81 0 99.2 0 3 245 187 267 RKW21653.1 MAG: DNA-directed RNA polymerase subunit beta [Candidatus Altimarinota bacterium] diamond 243 163 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;